miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 88626 0.67 0.527503
Target:  5'- uGACCuCGUccGGGucacaGCCCAGCgaGGCGCa -3'
miRNA:   3'- -CUGG-GCG--CCCug---UGGGUCGg-CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 140332 0.67 0.51858
Target:  5'- cGCCCGCGGuGcCACCUGGC-GGCGg- -3'
miRNA:   3'- cUGGGCGCC-CuGUGGGUCGgCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 49002 0.67 0.527502
Target:  5'- cGugCUGCGGGACGCCgAGUCcaUGCa -3'
miRNA:   3'- -CugGGCGCCCUGUGGgUCGGccGCGc -5'
14576 3' -65.6 NC_003521.1 + 54328 0.67 0.572881
Target:  5'- aGAuCCCGaCGGGGCucucGCCCugGGCCacucggGGCGUGg -3'
miRNA:   3'- -CU-GGGC-GCCCUG----UGGG--UCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 150911 0.67 0.527502
Target:  5'- cGCCUG-GGGAUcgaACCuCGGCuCGGUGCGg -3'
miRNA:   3'- cUGGGCgCCCUG---UGG-GUCG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36304 0.67 0.563717
Target:  5'- aGGCCgGgUGGGGCGCacccuCAGUCGGgGCGu -3'
miRNA:   3'- -CUGGgC-GCCCUGUGg----GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 127295 0.67 0.563717
Target:  5'- cGGCgCGaGGGAU-CCCAGCCGcuGCGCa -3'
miRNA:   3'- -CUGgGCgCCCUGuGGGUCGGC--CGCGc -5'
14576 3' -65.6 NC_003521.1 + 129603 0.67 0.536481
Target:  5'- uGACCCGUGu--CGCCCAcuuuCCGGCGCc -3'
miRNA:   3'- -CUGGGCGCccuGUGGGUc---GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 102774 0.67 0.554593
Target:  5'- cGGCggUCGCGGGcgacccACGCCCcgugcGCCGGCaGCGa -3'
miRNA:   3'- -CUG--GGCGCCC------UGUGGGu----CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 111203 0.67 0.517691
Target:  5'- cACCCGCcGGGCggccggcgacucgACUauuagagcgucgCGGCCGGCGCGg -3'
miRNA:   3'- cUGGGCGcCCUG-------------UGG------------GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 136937 0.67 0.553683
Target:  5'- uGACCgCGCGGca-GCCCAucccccuGUCGGCGCu -3'
miRNA:   3'- -CUGG-GCGCCcugUGGGU-------CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 13972 0.67 0.527502
Target:  5'- aGCCCuGauGGGCcuGCCCGGCgCGGCgGCGg -3'
miRNA:   3'- cUGGG-CgcCCUG--UGGGUCG-GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 221889 0.67 0.51858
Target:  5'- gGGCgUGUGGGGCGgaUuGCCGGCGCGc -3'
miRNA:   3'- -CUGgGCGCCCUGUggGuCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103497 0.67 0.51858
Target:  5'- cGCUgGCGaaaGGGCgaGCCCAGCagcaGGCGCGc -3'
miRNA:   3'- cUGGgCGC---CCUG--UGGGUCGg---CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 221339 0.67 0.51858
Target:  5'- cACCgaGCGGGccaccuGCACCUGGCCGcGCaGCGa -3'
miRNA:   3'- cUGGg-CGCCC------UGUGGGUCGGC-CG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 240628 0.67 0.554593
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 204008 0.67 0.563717
Target:  5'- cGGCCCGUGGcgcGugAUCaCGGCCugcccgaaaGGCGCGu -3'
miRNA:   3'- -CUGGGCGCC---CugUGG-GUCGG---------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 88779 0.67 0.572881
Target:  5'- gGACCUGCGGGugaaGCACCgcugCGGCCuGGUGa- -3'
miRNA:   3'- -CUGGGCGCCC----UGUGG----GUCGG-CCGCgc -5'
14576 3' -65.6 NC_003521.1 + 187192 0.67 0.545513
Target:  5'- cGGCCCGCcugcaucgGGGACAUUC-GUCGGCGg- -3'
miRNA:   3'- -CUGGGCG--------CCCUGUGGGuCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 16203 0.67 0.554593
Target:  5'- uGGCCCuucgagGUGGcGGCGCCCugccgccuGGCCGaGUGCGa -3'
miRNA:   3'- -CUGGG------CGCC-CUGUGGG--------UCGGC-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.