miRNA display CGI


Results 81 - 100 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 13972 0.67 0.527502
Target:  5'- aGCCCuGauGGGCcuGCCCGGCgCGGCgGCGg -3'
miRNA:   3'- cUGGG-CgcCCUG--UGGGUCG-GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 221339 0.67 0.51858
Target:  5'- cACCgaGCGGGccaccuGCACCUGGCCGcGCaGCGa -3'
miRNA:   3'- cUGGg-CGCCC------UGUGGGUCGGC-CG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 103497 0.67 0.51858
Target:  5'- cGCUgGCGaaaGGGCgaGCCCAGCagcaGGCGCGc -3'
miRNA:   3'- cUGGgCGC---CCUG--UGGGUCGg---CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 210242 0.67 0.544608
Target:  5'- cGACUCcuucagcugcauaGCGcGGACggGCCUucuguGGCCGGCGCGu -3'
miRNA:   3'- -CUGGG-------------CGC-CCUG--UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 129621 0.67 0.536482
Target:  5'- cGAgUCGCcGGcCGCCCGGCgGGUGCu -3'
miRNA:   3'- -CUgGGCGcCCuGUGGGUCGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 85221 0.67 0.536482
Target:  5'- cGGCgCCGCGccGGACAgagaCauggGGCCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGC--CCUGUg---Gg---UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 145954 0.67 0.536482
Target:  5'- cGAgCUGCuGGGcCGCCUcaacaucuaugAGCUGGCGCGc -3'
miRNA:   3'- -CUgGGCG-CCCuGUGGG-----------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 29501 0.67 0.535581
Target:  5'- cGCCCGCGGGACcgccuguugACCCGcgaucucuGUCuaccccgcaugcaGGCGCGa -3'
miRNA:   3'- cUGGGCGCCCUG---------UGGGU--------CGG-------------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 71027 0.67 0.535581
Target:  5'- aGACCgGCGGaGgauagucccucgaGCGCCCaaAGCgCGGCGCc -3'
miRNA:   3'- -CUGGgCGCC-C-------------UGUGGG--UCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 224724 0.67 0.527503
Target:  5'- cGCCCGUGGugcucgccGACGCaggCGGCCaGCGCGu -3'
miRNA:   3'- cUGGGCGCC--------CUGUGg--GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 141937 0.67 0.527503
Target:  5'- uGACCgugcagCGCGuGGGCGCCCAccuGCUGG-GCGa -3'
miRNA:   3'- -CUGG------GCGC-CCUGUGGGU---CGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 88626 0.67 0.527503
Target:  5'- uGACCuCGUccGGGucacaGCCCAGCgaGGCGCa -3'
miRNA:   3'- -CUGG-GCG--CCCug---UGGGUCGg-CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 221889 0.67 0.51858
Target:  5'- gGGCgUGUGGGGCGgaUuGCCGGCGCGc -3'
miRNA:   3'- -CUGgGCGCCCUGUggGuCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 99612 0.68 0.50092
Target:  5'- uGACCUGCa--GCGCCCGG-CGGCGCa -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCgGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 75149 0.68 0.507071
Target:  5'- cGACCUG-GGGAUGCcuggacgcauggugCCAGCgCGGCGUGc -3'
miRNA:   3'- -CUGGGCgCCCUGUG--------------GGUCG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 196750 0.68 0.50092
Target:  5'- cGCCUGCaccgucuGCugcCCCGGCCGGCGCGa -3'
miRNA:   3'- cUGGGCGccc----UGu--GGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 211337 0.68 0.500919
Target:  5'- -uCCCGCGGGcGCGagugguugggguCCCgcagcAGCCGGuCGCGg -3'
miRNA:   3'- cuGGGCGCCC-UGU------------GGG-----UCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 43844 0.68 0.509718
Target:  5'- --gCCGCGGGcccgucacagGCGcCCCGGCCGGCu-- -3'
miRNA:   3'- cugGGCGCCC----------UGU-GGGUCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 153077 0.68 0.509718
Target:  5'- --gCCGcCGGGGC-CCgGGCCGGgGCc -3'
miRNA:   3'- cugGGC-GCCCUGuGGgUCGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 38260 0.68 0.474943
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGc -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.