miRNA display CGI


Results 101 - 120 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 121888 0.68 0.483529
Target:  5'- uGGCCCuGaCGGGACgccgccGCCCAcGCCgcGGCGCc -3'
miRNA:   3'- -CUGGG-C-GCCCUG------UGGGU-CGG--CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 222046 0.68 0.474943
Target:  5'- uAUCgGCGGGGgGCaCCAGCCGuCGCa -3'
miRNA:   3'- cUGGgCGCCCUgUG-GGUCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 129054 0.68 0.466434
Target:  5'- -gUCCaCGaGGGCGCCCuugAGCUGGCGCa -3'
miRNA:   3'- cuGGGcGC-CCUGUGGG---UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 128400 0.68 0.463897
Target:  5'- cGCCUgaGCGGGcgucgguccgaaagGCGgCCGGUCGGCGCa -3'
miRNA:   3'- cUGGG--CGCCC--------------UGUgGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 185214 0.68 0.483529
Target:  5'- gGGCCgCGCGGGACugCguGUacgacgaggagaCGGUGUGg -3'
miRNA:   3'- -CUGG-GCGCCCUGugGguCG------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 117324 0.68 0.49132
Target:  5'- cGGCa-GCGGcgacgacGACACCCcGCCGGCGaCGg -3'
miRNA:   3'- -CUGggCGCC-------CUGUGGGuCGGCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 153077 0.68 0.509718
Target:  5'- --gCCGcCGGGGC-CCgGGCCGGgGCc -3'
miRNA:   3'- cugGGC-GCCCUGuGGgUCGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 43844 0.68 0.509718
Target:  5'- --gCCGCGGGcccgucacagGCGcCCCGGCCGGCu-- -3'
miRNA:   3'- cugGGCGCCC----------UGU-GGGUCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 120932 0.68 0.509718
Target:  5'- uGCCCGCGGcGGCGgcUCCGGCgaGGgGCa -3'
miRNA:   3'- cUGGGCGCC-CUGU--GGGUCGg-CCgCGc -5'
14576 3' -65.6 NC_003521.1 + 196750 0.68 0.50092
Target:  5'- cGCCUGCaccgucuGCugcCCCGGCCGGCGCGa -3'
miRNA:   3'- cUGGGCGccc----UGu--GGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 99612 0.68 0.50092
Target:  5'- uGACCUGCa--GCGCCCGG-CGGCGCa -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCgGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 19145 0.68 0.50092
Target:  5'- aGACCCacgGCGuGGugACCgAGagcaCGGCGCu -3'
miRNA:   3'- -CUGGG---CGC-CCugUGGgUCg---GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 66765 0.68 0.492189
Target:  5'- -uCCCGCGGGugAUgCcGCCGGCcCa -3'
miRNA:   3'- cuGGGCGCCCugUGgGuCGGCCGcGc -5'
14576 3' -65.6 NC_003521.1 + 235509 0.68 0.492189
Target:  5'- cGGCCgGCGGGGCACgCC-GCCc-CGCGa -3'
miRNA:   3'- -CUGGgCGCCCUGUG-GGuCGGccGCGC- -5'
14576 3' -65.6 NC_003521.1 + 219269 0.68 0.489584
Target:  5'- gGGCCCGCaGGGGCuggcacaugagcggGCCCaugaaGGCCaGCGUGu -3'
miRNA:   3'- -CUGGGCG-CCCUG--------------UGGG-----UCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 226889 0.68 0.474944
Target:  5'- --gCUGCgGGGGCACCacggCGGCCaGCGCGg -3'
miRNA:   3'- cugGGCG-CCCUGUGG----GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 89011 0.68 0.474944
Target:  5'- --gCCGCGGG-C-CCCA-CCGGCGCc -3'
miRNA:   3'- cugGGCGCCCuGuGGGUcGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 45649 0.68 0.474944
Target:  5'- cGGCuCCGCGGGguccggcgcACACCCgcuaucaggGGCCGGacaccgaGCGg -3'
miRNA:   3'- -CUG-GGCGCCC---------UGUGGG---------UCGGCCg------CGC- -5'
14576 3' -65.6 NC_003521.1 + 28143 0.68 0.466434
Target:  5'- uACCUGCGGGAUacgcuGCCCGuCUGGgGCa -3'
miRNA:   3'- cUGGGCGCCCUG-----UGGGUcGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 53848 0.68 0.466434
Target:  5'- -uUCCGCGcGACGgcgucCUCGGCCGGCGUGu -3'
miRNA:   3'- cuGGGCGCcCUGU-----GGGUCGGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.