miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 202185 1.06 0.001162
Target:  5'- gGACCCGCGGGACACCCAGCCGGCGCGc -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 1958 1.06 0.001162
Target:  5'- gGACCCGCGGGACACCCAGCCGGCGCGc -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 60690 0.79 0.096826
Target:  5'- cGGCCgCGCGGGGgACCCGGgggCGGCGCGg -3'
miRNA:   3'- -CUGG-GCGCCCUgUGGGUCg--GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 70095 0.79 0.099177
Target:  5'- --gCCGCaGGGCACCUGGCCGGCGUGc -3'
miRNA:   3'- cugGGCGcCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92355 0.78 0.128221
Target:  5'- cGACCCGCGGGcuuuucgucaucagcACGCaCCGgccaccccuggagccGCCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCC---------------UGUG-GGU---------------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 173256 0.77 0.138238
Target:  5'- uGGCCCGCGGGGCccGCCgccugacaCAGuuGGCGCa -3'
miRNA:   3'- -CUGGGCGCCCUG--UGG--------GUCggCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 195685 0.76 0.155333
Target:  5'- aGAUCUGCGGGAUGUCCuGCCGGUGCa -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 102975 0.76 0.166489
Target:  5'- gGGCUCugGCGGGGCgGCCCAGCCgcGGCGUGa -3'
miRNA:   3'- -CUGGG--CGCCCUG-UGGGUCGG--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 162905 0.76 0.170364
Target:  5'- uGCCUGCaGGACGCCCuGuuGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCUGUGGGuCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 44056 0.76 0.174321
Target:  5'- cGCCCGCGGu-CGCgCCGGCCGGgGCa -3'
miRNA:   3'- cUGGGCGCCcuGUG-GGUCGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 64743 0.76 0.162693
Target:  5'- gGACgCCGUGGccaaGACGCC-GGCCGGCGCGg -3'
miRNA:   3'- -CUG-GGCGCC----CUGUGGgUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 164822 0.76 0.174321
Target:  5'- cGCCCGCGGGGgaggaggaACCggCGGCCGGCGCc -3'
miRNA:   3'- cUGGGCGCCCUg-------UGG--GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 196963 0.75 0.203904
Target:  5'- cGGCCCGggagccggcCGGGGCGCCUgugacgggcccgcGGCCGGCgGCGg -3'
miRNA:   3'- -CUGGGC---------GCCCUGUGGG-------------UCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 178790 0.75 0.190972
Target:  5'- -gUCCGCGGGACgggcgaggcauGCCCGGCgGGCGgGu -3'
miRNA:   3'- cuGGGCGCCCUG-----------UGGGUCGgCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 135644 0.75 0.186683
Target:  5'- cGAUCgGCGGGGgGCCCAGCguCGGCgGCGu -3'
miRNA:   3'- -CUGGgCGCCCUgUGGGUCG--GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 85334 0.75 0.204363
Target:  5'- uGGCCCGCGGccCGCCgcaGGCCGGCGUc -3'
miRNA:   3'- -CUGGGCGCCcuGUGGg--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 24162 0.74 0.223477
Target:  5'- uACUCGCGGGGCACUCggaaaggagcgaAGCCGG-GCGg -3'
miRNA:   3'- cUGGGCGCCCUGUGGG------------UCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 68420 0.74 0.223477
Target:  5'- -uCCCGCGGcGACgGCUCcGCCGGCGCc -3'
miRNA:   3'- cuGGGCGCC-CUG-UGGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 213713 0.74 0.223477
Target:  5'- gGGCCuCG-GGGAUGCCCAGCCagacGGCGCc -3'
miRNA:   3'- -CUGG-GCgCCCUGUGGGUCGG----CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 62222 0.74 0.228487
Target:  5'- gGACgCCGUGcugcaggaGGGCGCCCGGCUGGaCGCGc -3'
miRNA:   3'- -CUG-GGCGC--------CCUGUGGGUCGGCC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.