Results 41 - 60 of 210 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 155325 | 0.71 | 0.356606 |
Target: 5'- aGACgaCCGCGGGu--CCCGGCgggGGCGCGg -3' miRNA: 3'- -CUG--GGCGCCCuguGGGUCGg--CCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 137296 | 0.71 | 0.315425 |
Target: 5'- gGAgCUGCGGGugGCgCGGCUGcuGCGCGg -3' miRNA: 3'- -CUgGGCGCCCugUGgGUCGGC--CGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 135384 | 0.7 | 0.377077 |
Target: 5'- cGCCCGCGGG-CGCCaaaccgugccgaGGCgGGCGgGa -3' miRNA: 3'- cUGGGCGCCCuGUGGg-----------UCGgCCGCgC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 14535 | 0.7 | 0.378568 |
Target: 5'- cGCCCGaGGGcucguACGCCaCGGCCGaGCGCa -3' miRNA: 3'- cUGGGCgCCC-----UGUGG-GUCGGC-CGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 207769 | 0.7 | 0.376332 |
Target: 5'- gGACCCGCuGGGcgGCAUCCacgugcugcucuauGGCaCGGCGCu -3' miRNA: 3'- -CUGGGCG-CCC--UGUGGG--------------UCG-GCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 165958 | 0.7 | 0.376332 |
Target: 5'- cGugUCGUgcucGGGcaggcugaggaagcGCACCCAGUCGGCGCu -3' miRNA: 3'- -CugGGCG----CCC--------------UGUGGGUCGGCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 142288 | 0.7 | 0.400645 |
Target: 5'- gGACCCGcCGccGCugcagcgGCCCAGCCGcGCGCGu -3' miRNA: 3'- -CUGGGC-GCccUG-------UGGGUCGGC-CGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 39801 | 0.7 | 0.377822 |
Target: 5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3' miRNA: 3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 8628 | 0.7 | 0.378568 |
Target: 5'- cACCCGCGGGG-GCCCA--UGGCGUGg -3' miRNA: 3'- cUGGGCGCCCUgUGGGUcgGCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 36228 | 0.7 | 0.393706 |
Target: 5'- gGACCCcgaGCaGGACuACCgAcuGCCGGCGCGc -3' miRNA: 3'- -CUGGG---CGcCCUG-UGGgU--CGGCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 187616 | 0.7 | 0.378568 |
Target: 5'- cGGCCUGCcGGGCgaGCCgGGCCGcGCGCc -3' miRNA: 3'- -CUGGGCGcCCUG--UGGgUCGGC-CGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 92236 | 0.7 | 0.401421 |
Target: 5'- gGGCCCGaCGGG-CGCCgcgcggucuuuUGGCCGGuCGCGu -3' miRNA: 3'- -CUGGGC-GCCCuGUGG-----------GUCGGCC-GCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 240028 | 0.7 | 0.377822 |
Target: 5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3' miRNA: 3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 196880 | 0.69 | 0.409231 |
Target: 5'- cGGCaCCGCGGGugA---GGCCGGgGCGg -3' miRNA: 3'- -CUG-GGCGCCCugUgggUCGGCCgCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 32079 | 0.69 | 0.41634 |
Target: 5'- uGGCCCGUGGccACGgCCAGCgccaugcguuuggCGGCGCGg -3' miRNA: 3'- -CUGGGCGCCc-UGUgGGUCG-------------GCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 109992 | 0.69 | 0.41634 |
Target: 5'- cGGCCUgccgguccagcagGCGGGagauguGCACCCGGCUcucgugGGCGCGc -3' miRNA: 3'- -CUGGG-------------CGCCC------UGUGGGUCGG------CCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 92471 | 0.69 | 0.417135 |
Target: 5'- uGCCCGCucgGGGGuCuCCCAGCCucuccgGGCGUGg -3' miRNA: 3'- cUGGGCG---CCCU-GuGGGUCGG------CCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 240122 | 0.69 | 0.417135 |
Target: 5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGg -3' miRNA: 3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 59936 | 0.69 | 0.417135 |
Target: 5'- -cUCCGaCGuGGACGCCgaucaaCAGcCCGGCGCGg -3' miRNA: 3'- cuGGGC-GC-CCUGUGG------GUC-GGCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 85508 | 0.69 | 0.457166 |
Target: 5'- gGACCCGCGgucgucucacccaGGACGCCgaAGCCcauGGCGUu -3' miRNA: 3'- -CUGGGCGC-------------CCUGUGGg-UCGG---CCGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home