Results 21 - 40 of 210 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 91767 | 0.73 | 0.247854 |
Target: 5'- -cCCCGCGGGucccgcauccccccACACCCGGgCGGCGg- -3' miRNA: 3'- cuGGGCGCCC--------------UGUGGGUCgGCCGCgc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 230321 | 0.73 | 0.249483 |
Target: 5'- cGCCUGgGGGGCcacgccauCCCcGCCGGCGCa -3' miRNA: 3'- cUGGGCgCCCUGu-------GGGuCGGCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 66616 | 0.73 | 0.249483 |
Target: 5'- cGACCCGCGcGAC-CCCAacGUgGGCGCGu -3' miRNA: 3'- -CUGGGCGCcCUGuGGGU--CGgCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 152343 | 0.73 | 0.249483 |
Target: 5'- gGGCCCGCGccGACGCugcucuggggCCGGCCGGgGCGg -3' miRNA: 3'- -CUGGGCGCc-CUGUG----------GGUCGGCCgCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 101908 | 0.73 | 0.254975 |
Target: 5'- --gCCGUGGuccGACACCgAGCCGGCGUa -3' miRNA: 3'- cugGGCGCC---CUGUGGgUCGGCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 105453 | 0.73 | 0.266256 |
Target: 5'- cGCCCGCGGGcgauaacCGCCgCGGagaCGGCGCGc -3' miRNA: 3'- cUGGGCGCCCu------GUGG-GUCg--GCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 113845 | 0.72 | 0.296221 |
Target: 5'- cGGCa-GCGGGGCGgCCGGCgacgaCGGCGCGg -3' miRNA: 3'- -CUGggCGCCCUGUgGGUCG-----GCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 95164 | 0.72 | 0.302519 |
Target: 5'- aACUCGCGGGccgaggGCACCuCGcGCuCGGCGCGg -3' miRNA: 3'- cUGGGCGCCC------UGUGG-GU-CG-GCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 15213 | 0.72 | 0.302519 |
Target: 5'- cGACaUCGUGGGGCugCaggCGGCCGaGCGCGa -3' miRNA: 3'- -CUG-GGCGCCCUGugG---GUCGGC-CGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 10497 | 0.72 | 0.30252 |
Target: 5'- cGCCgGCGGGGauggcguggcCcCCCAGgCGGCGCGa -3' miRNA: 3'- cUGGgCGCCCU----------GuGGGUCgGCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 115813 | 0.71 | 0.31477 |
Target: 5'- cGCCgcucaggCGCGGGugGCUCAGCaGGCGCu -3' miRNA: 3'- cUGG-------GCGCCCugUGGGUCGgCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 137296 | 0.71 | 0.315425 |
Target: 5'- gGAgCUGCGGGugGCgCGGCUGcuGCGCGg -3' miRNA: 3'- -CUgGGCGCCCugUGgGUCGGC--CGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 24406 | 0.71 | 0.322032 |
Target: 5'- gGGCCCGCGGaGCAUagaaagCCAGaCGGCGCa -3' miRNA: 3'- -CUGGGCGCCcUGUG------GGUCgGCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 39241 | 0.71 | 0.324703 |
Target: 5'- uGGCCCGCGGcGCGuucagcCCCAGCCGGUuggaccgauacagccGCGc -3' miRNA: 3'- -CUGGGCGCCcUGU------GGGUCGGCCG---------------CGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 239469 | 0.71 | 0.324704 |
Target: 5'- uGGCCCGCGGcGCGuucagcCCCAGCCGGUuggaccgauacagccGCGc -3' miRNA: 3'- -CUGGGCGCCcUGU------GGGUCGGCCG---------------CGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 198266 | 0.71 | 0.335554 |
Target: 5'- --gCCGCcGGACAgCCAGCCGGgcguCGCGg -3' miRNA: 3'- cugGGCGcCCUGUgGGUCGGCC----GCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 204307 | 0.71 | 0.335554 |
Target: 5'- cGACCgGCGGGugACCgCAGuCCGaCGCc -3' miRNA: 3'- -CUGGgCGCCCugUGG-GUC-GGCcGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 61312 | 0.71 | 0.342469 |
Target: 5'- cGCCCGUGGGACuACUgGGacacguguuccCCGGCGCu -3' miRNA: 3'- cUGGGCGCCCUG-UGGgUC-----------GGCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 129695 | 0.71 | 0.349487 |
Target: 5'- cGACggGCGaGGACGCCCGcuucuGCCGGcCGCGg -3' miRNA: 3'- -CUGggCGC-CCUGUGGGU-----CGGCC-GCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 65717 | 0.71 | 0.356606 |
Target: 5'- cGGCgCCGCGGcGGC-CCUGGCCGGCa-- -3' miRNA: 3'- -CUG-GGCGCC-CUGuGGGUCGGCCGcgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home