miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 103574 0.71 0.356606
Target:  5'- uGCCCGCuGccgccgucGGC-CCCGGCCGGUGCGc -3'
miRNA:   3'- cUGGGCGcC--------CUGuGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 155325 0.71 0.356606
Target:  5'- aGACgaCCGCGGGu--CCCGGCgggGGCGCGg -3'
miRNA:   3'- -CUG--GGCGCCCuguGGGUCGg--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 207769 0.7 0.376332
Target:  5'- gGACCCGCuGGGcgGCAUCCacgugcugcucuauGGCaCGGCGCu -3'
miRNA:   3'- -CUGGGCG-CCC--UGUGGG--------------UCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 165958 0.7 0.376332
Target:  5'- cGugUCGUgcucGGGcaggcugaggaagcGCACCCAGUCGGCGCu -3'
miRNA:   3'- -CugGGCG----CCC--------------UGUGGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 135384 0.7 0.377077
Target:  5'- cGCCCGCGGG-CGCCaaaccgugccgaGGCgGGCGgGa -3'
miRNA:   3'- cUGGGCGCCCuGUGGg-----------UCGgCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 240028 0.7 0.377822
Target:  5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3'
miRNA:   3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 39801 0.7 0.377822
Target:  5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3'
miRNA:   3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 14535 0.7 0.378568
Target:  5'- cGCCCGaGGGcucguACGCCaCGGCCGaGCGCa -3'
miRNA:   3'- cUGGGCgCCC-----UGUGG-GUCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 187616 0.7 0.378568
Target:  5'- cGGCCUGCcGGGCgaGCCgGGCCGcGCGCc -3'
miRNA:   3'- -CUGGGCGcCCUG--UGGgUCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 8628 0.7 0.378568
Target:  5'- cACCCGCGGGG-GCCCA--UGGCGUGg -3'
miRNA:   3'- cUGGGCGCCCUgUGGGUcgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36228 0.7 0.393706
Target:  5'- gGACCCcgaGCaGGACuACCgAcuGCCGGCGCGc -3'
miRNA:   3'- -CUGGG---CGcCCUG-UGGgU--CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 142288 0.7 0.400645
Target:  5'- gGACCCGcCGccGCugcagcgGCCCAGCCGcGCGCGu -3'
miRNA:   3'- -CUGGGC-GCccUG-------UGGGUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92236 0.7 0.401421
Target:  5'- gGGCCCGaCGGG-CGCCgcgcggucuuuUGGCCGGuCGCGu -3'
miRNA:   3'- -CUGGGC-GCCCuGUGG-----------GUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 18071 0.69 0.40923
Target:  5'- cGACgCCGUGGccguaGCCCAGaCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGCCcug--UGGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 196880 0.69 0.409231
Target:  5'- cGGCaCCGCGGGugA---GGCCGGgGCGg -3'
miRNA:   3'- -CUG-GGCGCCCugUgggUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 109992 0.69 0.41634
Target:  5'- cGGCCUgccgguccagcagGCGGGagauguGCACCCGGCUcucgugGGCGCGc -3'
miRNA:   3'- -CUGGG-------------CGCCC------UGUGGGUCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 32079 0.69 0.41634
Target:  5'- uGGCCCGUGGccACGgCCAGCgccaugcguuuggCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCc-UGUgGGUCG-------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 238488 0.69 0.417135
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGa -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 59936 0.69 0.417135
Target:  5'- -cUCCGaCGuGGACGCCgaucaaCAGcCCGGCGCGg -3'
miRNA:   3'- cuGGGC-GC-CCUGUGG------GUC-GGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92471 0.69 0.417135
Target:  5'- uGCCCGCucgGGGGuCuCCCAGCCucuccgGGCGUGg -3'
miRNA:   3'- cUGGGCG---CCCU-GuGGGUCGG------CCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.