miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 238488 0.69 0.417135
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGa -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 148612 0.69 0.425131
Target:  5'- gGACCC-CGGGAC-CCgAGCaGGgGCGg -3'
miRNA:   3'- -CUGGGcGCCCUGuGGgUCGgCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 186540 0.69 0.425132
Target:  5'- gGGCuCCGUGGGAgGCagGGCCGGCaCGa -3'
miRNA:   3'- -CUG-GGCGCCCUgUGggUCGGCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 201594 0.69 0.425132
Target:  5'- cGCCCGCGGGcCACCgCuguccccgAGCCcGCGCu -3'
miRNA:   3'- cUGGGCGCCCuGUGG-G--------UCGGcCGCGc -5'
14576 3' -65.6 NC_003521.1 + 44166 0.69 0.425132
Target:  5'- gGACCUGC---GCACCCAGCUGGaCGUGc -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 39895 0.69 0.433218
Target:  5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGa -3'
miRNA:   3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 106569 0.69 0.433218
Target:  5'- aACCUGCaccGGGuCACCCuGGCCgagggcGGCGCGg -3'
miRNA:   3'- cUGGGCG---CCCuGUGGG-UCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 135444 0.69 0.433219
Target:  5'- cGCCCGCGGGAaccgucggucCGCCCcccGUCGaCGCGg -3'
miRNA:   3'- cUGGGCGCCCU----------GUGGGu--CGGCcGCGC- -5'
14576 3' -65.6 NC_003521.1 + 201379 0.69 0.441395
Target:  5'- cGGCCCuCGGcGCcggGCUCGGCCGGCaGCGg -3'
miRNA:   3'- -CUGGGcGCCcUG---UGGGUCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 131298 0.69 0.441395
Target:  5'- cGACCUGUac-ACGCCCugcucgagcagcGGCCGGCGCGa -3'
miRNA:   3'- -CUGGGCGcccUGUGGG------------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 90546 0.69 0.441395
Target:  5'- -cCCCGCGacaGCACCCacgagaGGCCGGcCGCGg -3'
miRNA:   3'- cuGGGCGCcc-UGUGGG------UCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 170715 0.69 0.441395
Target:  5'- cGGCCCuuCGGcGGCACgCCGGCCaGGUGCc -3'
miRNA:   3'- -CUGGGc-GCC-CUGUG-GGUCGG-CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 91954 0.69 0.448828
Target:  5'- gGACCCcguggcgGCGaGGGCggaACCCGGCggccgaucCGGCGCGa -3'
miRNA:   3'- -CUGGG-------CGC-CCUG---UGGGUCG--------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 127910 0.69 0.449657
Target:  5'- uGCCCGUgacGGGGCccuCCCAGgCGGCGa- -3'
miRNA:   3'- cUGGGCG---CCCUGu--GGGUCgGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 166240 0.69 0.449657
Target:  5'- --gCCGCGGGACGCCgC-GCCGcCGCu -3'
miRNA:   3'- cugGGCGCCCUGUGG-GuCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 116632 0.69 0.449657
Target:  5'- gGGCCCGCuc-ACcCCCAGCCGGCagGCGc -3'
miRNA:   3'- -CUGGGCGcccUGuGGGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 74583 0.69 0.449658
Target:  5'- gGAgCgGCGGcgcGGCGuCCCgcGGCCGGCGCGc -3'
miRNA:   3'- -CUgGgCGCC---CUGU-GGG--UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 42541 0.69 0.449658
Target:  5'- -cCCCaGCGGuccuccgcGACGCCCGGCUGGCuguccgGCGg -3'
miRNA:   3'- cuGGG-CGCC--------CUGUGGGUCGGCCG------CGC- -5'
14576 3' -65.6 NC_003521.1 + 1854 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 202081 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.