miRNA display CGI


Results 81 - 100 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 85508 0.69 0.457166
Target:  5'- gGACCCGCGgucgucucacccaGGACGCCgaAGCCcauGGCGUu -3'
miRNA:   3'- -CUGGGCGC-------------CCUGUGGg-UCGG---CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 128400 0.68 0.463897
Target:  5'- cGCCUgaGCGGGcgucgguccgaaagGCGgCCGGUCGGCGCa -3'
miRNA:   3'- cUGGG--CGCCC--------------UGUgGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129054 0.68 0.466434
Target:  5'- -gUCCaCGaGGGCGCCCuugAGCUGGCGCa -3'
miRNA:   3'- cuGGGcGC-CCUGUGGG---UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 174073 0.68 0.466434
Target:  5'- cACCCGCGGGAUGucgUCCAGUcgCGGCaCGa -3'
miRNA:   3'- cUGGGCGCCCUGU---GGGUCG--GCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 88026 0.68 0.466434
Target:  5'- cACCUGCcGGugACCgAGgCGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCugUGGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 28143 0.68 0.466434
Target:  5'- uACCUGCGGGAUacgcuGCCCGuCUGGgGCa -3'
miRNA:   3'- cUGGGCGCCCUG-----UGGGUcGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 112456 0.68 0.466434
Target:  5'- cGGCCCugGUGGGcGCGCCCGGCgGG-GCc -3'
miRNA:   3'- -CUGGG--CGCCC-UGUGGGUCGgCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 53848 0.68 0.466434
Target:  5'- -uUCCGCGcGACGgcgucCUCGGCCGGCGUGu -3'
miRNA:   3'- cuGGGCGCcCUGU-----GGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 38260 0.68 0.474943
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGc -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 222046 0.68 0.474943
Target:  5'- uAUCgGCGGGGgGCaCCAGCCGuCGCa -3'
miRNA:   3'- cUGGgCGCCCUgUG-GGUCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 89011 0.68 0.474944
Target:  5'- --gCCGCGGG-C-CCCA-CCGGCGCc -3'
miRNA:   3'- cugGGCGCCCuGuGGGUcGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 45649 0.68 0.474944
Target:  5'- cGGCuCCGCGGGguccggcgcACACCCgcuaucaggGGCCGGacaccgaGCGg -3'
miRNA:   3'- -CUG-GGCGCCC---------UGUGGG---------UCGGCCg------CGC- -5'
14576 3' -65.6 NC_003521.1 + 226889 0.68 0.474944
Target:  5'- --gCUGCgGGGGCACCacggCGGCCaGCGCGg -3'
miRNA:   3'- cugGGCG-CCCUGUGG----GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 131088 0.68 0.474944
Target:  5'- cGGCUCGCGcgggcuccGGACGgCgGGgCGGCGCGg -3'
miRNA:   3'- -CUGGGCGC--------CCUGUgGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 188253 0.68 0.483529
Target:  5'- uGCCCGCGcGACGUCUucuGCCGGCGUc -3'
miRNA:   3'- cUGGGCGCcCUGUGGGu--CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 121888 0.68 0.483529
Target:  5'- uGGCCCuGaCGGGACgccgccGCCCAcGCCgcGGCGCc -3'
miRNA:   3'- -CUGGG-C-GCCCUG------UGGGU-CGG--CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 185214 0.68 0.483529
Target:  5'- gGGCCgCGCGGGACugCguGUacgacgaggagaCGGUGUGg -3'
miRNA:   3'- -CUGG-GCGCCCUGugGguCG------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 219269 0.68 0.489584
Target:  5'- gGGCCCGCaGGGGCuggcacaugagcggGCCCaugaaGGCCaGCGUGu -3'
miRNA:   3'- -CUGGGCG-CCCUG--------------UGGG-----UCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92181 0.68 0.49132
Target:  5'- -cCCCGCcgagcucGGGGCcguuuuucgccGCCCGGCCG-CGCGa -3'
miRNA:   3'- cuGGGCG-------CCCUG-----------UGGGUCGGCcGCGC- -5'
14576 3' -65.6 NC_003521.1 + 117324 0.68 0.49132
Target:  5'- cGGCa-GCGGcgacgacGACACCCcGCCGGCGaCGg -3'
miRNA:   3'- -CUGggCGCC-------CUGUGGGuCGGCCGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.