Results 21 - 40 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 216869 | 0.66 | 0.61633 |
Target: 5'- aGGCCCguggaGCGGGACAUCCAgGCCauccaGGCcaccagcuugucguGCGa -3' miRNA: 3'- -CUGGG-----CGCCCUGUGGGU-CGG-----CCG--------------CGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 85390 | 0.66 | 0.613544 |
Target: 5'- cGCCCaGCGGGuCGgCCAGCuCgcacagcuccugguaGGCGCGc -3' miRNA: 3'- cUGGG-CGCCCuGUgGGUCG-G---------------CCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 36155 | 0.66 | 0.609831 |
Target: 5'- uGCCCGaggagGaGGACAcCCCGGaCGGCGUGc -3' miRNA: 3'- cUGGGCg----C-CCUGU-GGGUCgGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 104903 | 0.66 | 0.609831 |
Target: 5'- -uCCCGCGGccGugGCCgaGGCCGGCa-- -3' miRNA: 3'- cuGGGCGCC--CugUGGg-UCGGCCGcgc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 115804 | 0.66 | 0.609831 |
Target: 5'- uACCCGC-GGAUGCgCAGCCugcuGCGCa -3' miRNA: 3'- cUGGGCGcCCUGUGgGUCGGc---CGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 132686 | 0.66 | 0.609831 |
Target: 5'- cGAUCgGCuc-GCGCCCGGCUGGCGgGa -3' miRNA: 3'- -CUGGgCGcccUGUGGGUCGGCCGCgC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 30828 | 0.66 | 0.609831 |
Target: 5'- aACCCGCGaacuccacGGGCGCCUuGCgaCGGCaGCGg -3' miRNA: 3'- cUGGGCGC--------CCUGUGGGuCG--GCCG-CGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 168078 | 0.66 | 0.609831 |
Target: 5'- aGACgCGgGGGGCugCagaGGUCGGCGa- -3' miRNA: 3'- -CUGgGCgCCCUGugGg--UCGGCCGCgc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 106754 | 0.66 | 0.609831 |
Target: 5'- -cUCCGCGuccaGGGCGCCCAGgCGGUcgaaaccagGCGu -3' miRNA: 3'- cuGGGCGC----CCUGUGGGUCgGCCG---------CGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 212335 | 0.66 | 0.60056 |
Target: 5'- aGCCCGaCGGucACGCCCAucaccacccGCUGGUGCa -3' miRNA: 3'- cUGGGC-GCCc-UGUGGGU---------CGGCCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 169312 | 0.66 | 0.60056 |
Target: 5'- cGGCCgGCGucGGuCGCagcgucgCGGCCGGCGUGg -3' miRNA: 3'- -CUGGgCGC--CCuGUGg------GUCGGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 210595 | 0.66 | 0.60056 |
Target: 5'- gGACCUGCaGcGcGACGCCaaCGGCCGGC-CGa -3' miRNA: 3'- -CUGGGCG-C-C-CUGUGG--GUCGGCCGcGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 88548 | 0.66 | 0.60056 |
Target: 5'- cGGCCUccuCGGGGCAgggcaCCAGCUGGCccGCGu -3' miRNA: 3'- -CUGGGc--GCCCUGUg----GGUCGGCCG--CGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 217406 | 0.66 | 0.60056 |
Target: 5'- aGGCUgaGCGGcGGCAUgaAGCCGGUGCa -3' miRNA: 3'- -CUGGg-CGCC-CUGUGggUCGGCCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 129102 | 0.66 | 0.60056 |
Target: 5'- --gCUGUGGGugG-CguGCCGGCGCa -3' miRNA: 3'- cugGGCGCCCugUgGguCGGCCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 50196 | 0.66 | 0.60056 |
Target: 5'- cACUgGaGGGACACCCugacgcuacugcGGCUGGUGUGg -3' miRNA: 3'- cUGGgCgCCCUGUGGG------------UCGGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 223393 | 0.66 | 0.599634 |
Target: 5'- cGCCCcgacGCGGGccgugugGCGcCCCGGCgCGGCGUc -3' miRNA: 3'- cUGGG----CGCCC-------UGU-GGGUCG-GCCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 95506 | 0.66 | 0.596856 |
Target: 5'- aGGCCCucGUGcuucaggccgaacuGGAUGCCCGgcgagacGCCGGCGCGc -3' miRNA: 3'- -CUGGG--CGC--------------CCUGUGGGU-------CGGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 181450 | 0.66 | 0.591307 |
Target: 5'- aGugCUGCGcGGCGuCCagCGGCUGGCGCGc -3' miRNA: 3'- -CugGGCGCcCUGU-GG--GUCGGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 17419 | 0.66 | 0.591307 |
Target: 5'- cGCCgCGcCGGGGCGCCacaCGGCCcgcgucggGGCGCc -3' miRNA: 3'- cUGG-GC-GCCCUGUGG---GUCGG--------CCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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