miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 181450 0.66 0.591307
Target:  5'- aGugCUGCGcGGCGuCCagCGGCUGGCGCGc -3'
miRNA:   3'- -CugGGCGCcCUGU-GG--GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 153584 0.66 0.591307
Target:  5'- uGACCgGCGaGGACACggucaacgUCAGCgGGCGg- -3'
miRNA:   3'- -CUGGgCGC-CCUGUG--------GGUCGgCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 17419 0.66 0.591307
Target:  5'- cGCCgCGcCGGGGCGCCacaCGGCCcgcgucggGGCGCc -3'
miRNA:   3'- cUGG-GC-GCCCUGUGG---GUCGG--------CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 26728 0.66 0.590383
Target:  5'- cACCCuGCuGGuccuGACGCCCgugauguGGUCGGCGCGc -3'
miRNA:   3'- cUGGG-CG-CC----CUGUGGG-------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 161969 0.66 0.582079
Target:  5'- cGACCgGCGGaucacCACCUucGGCUGGUGCu -3'
miRNA:   3'- -CUGGgCGCCcu---GUGGG--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 214610 0.66 0.582079
Target:  5'- aGAgCUGCGGGuaGCCCAGCCagaccaGCGUGc -3'
miRNA:   3'- -CUgGGCGCCCugUGGGUCGGc-----CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 214809 0.66 0.582079
Target:  5'- --gCCGUcGGGCGCCgGGCgCGGCGaCGg -3'
miRNA:   3'- cugGGCGcCCUGUGGgUCG-GCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 133189 0.66 0.582079
Target:  5'- cGGCCuCGgcgauCGGGACgACCgCGGUCGGgGCGc -3'
miRNA:   3'- -CUGG-GC-----GCCCUG-UGG-GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 145864 0.66 0.582079
Target:  5'- gGGCCCggcgGCGGGcgGCGCCgAcgacgaggccGCCGGCgGCGg -3'
miRNA:   3'- -CUGGG----CGCCC--UGUGGgU----------CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 165996 0.66 0.582079
Target:  5'- ---gCGCGGGACGCCgucgcGCuCGGCGCc -3'
miRNA:   3'- cuggGCGCCCUGUGGgu---CG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 191560 0.66 0.582079
Target:  5'- uACgUGCGGGcCAUCCuagaGGCCGaGCGCa -3'
miRNA:   3'- cUGgGCGCCCuGUGGG----UCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 38403 0.67 0.572882
Target:  5'- aGACCCcaUGGGuuGCGCCUGGCUuuucaccgggGGCGCGg -3'
miRNA:   3'- -CUGGGc-GCCC--UGUGGGUCGG----------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 54328 0.67 0.572881
Target:  5'- aGAuCCCGaCGGGGCucucGCCCugGGCCacucggGGCGUGg -3'
miRNA:   3'- -CU-GGGC-GCCCUG----UGGG--UCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 88779 0.67 0.572881
Target:  5'- gGACCUGCGGGugaaGCACCgcugCGGCCuGGUGa- -3'
miRNA:   3'- -CUGGGCGCCC----UGUGG----GUCGG-CCGCgc -5'
14576 3' -65.6 NC_003521.1 + 80108 0.67 0.563718
Target:  5'- cGACCaCGauguuGGGAgCGCCCuuguguuuuugcGGCCGGUGCu -3'
miRNA:   3'- -CUGG-GCg----CCCU-GUGGG------------UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 207336 0.67 0.563718
Target:  5'- -cUUCGgGGGGCGcguCCCucgGGUCGGCGCGg -3'
miRNA:   3'- cuGGGCgCCCUGU---GGG---UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 204008 0.67 0.563717
Target:  5'- cGGCCCGUGGcgcGugAUCaCGGCCugcccgaaaGGCGCGu -3'
miRNA:   3'- -CUGGGCGCC---CugUGG-GUCGG---------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36304 0.67 0.563717
Target:  5'- aGGCCgGgUGGGGCGCacccuCAGUCGGgGCGu -3'
miRNA:   3'- -CUGGgC-GCCCUGUGg----GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 127295 0.67 0.563717
Target:  5'- cGGCgCGaGGGAU-CCCAGCCGcuGCGCa -3'
miRNA:   3'- -CUGgGCgCCCUGuGGGUCGGC--CGCGc -5'
14576 3' -65.6 NC_003521.1 + 148917 0.67 0.558238
Target:  5'- --gCCGCGGcaucgagcaccgcaGCGCCguGCUGGCGCGu -3'
miRNA:   3'- cugGGCGCCc-------------UGUGGguCGGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.