miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 200307 0.67 0.554594
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 17119 0.67 0.554594
Target:  5'- uACCCgGCGaGGucguCgAUCCuGCCGGCGCGc -3'
miRNA:   3'- cUGGG-CGC-CCu---G-UGGGuCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103130 0.67 0.554594
Target:  5'- aGGCUgGUGGGGagaGCCCaggGGCagcaGGCGCGu -3'
miRNA:   3'- -CUGGgCGCCCUg--UGGG---UCGg---CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 79 0.67 0.554593
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 240628 0.67 0.554593
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 102774 0.67 0.554593
Target:  5'- cGGCggUCGCGGGcgacccACGCCCcgugcGCCGGCaGCGa -3'
miRNA:   3'- -CUG--GGCGCCC------UGUGGGu----CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 16203 0.67 0.554593
Target:  5'- uGGCCCuucgagGUGGcGGCGCCCugccgccuGGCCGaGUGCGa -3'
miRNA:   3'- -CUGGG------CGCC-CUGUGGG--------UCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 88084 0.67 0.554593
Target:  5'- uGCCCGUGgaGGACAaCCGGCUGGUGg- -3'
miRNA:   3'- cUGGGCGC--CCUGUgGGUCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 136937 0.67 0.553683
Target:  5'- uGACCgCGCGGca-GCCCAucccccuGUCGGCGCu -3'
miRNA:   3'- -CUGG-GCGCCcugUGGGU-------CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 60853 0.67 0.545514
Target:  5'- -uCCCGCaGGuguuCGCgCAGCUGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCu---GUGgGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 187192 0.67 0.545513
Target:  5'- cGGCCCGCcugcaucgGGGACAUUC-GUCGGCGg- -3'
miRNA:   3'- -CUGGGCG--------CCCUGUGGGuCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 150765 0.67 0.545513
Target:  5'- cGCCCGCGuGuGCGCUCgcgcgacgacgGGCgGGCGCGa -3'
miRNA:   3'- cUGGGCGC-CcUGUGGG-----------UCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 5310 0.67 0.545513
Target:  5'- -uUUCGCGGGGgcggcgUGCCCcGCCGGcCGCGa -3'
miRNA:   3'- cuGGGCGCCCU------GUGGGuCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 3974 0.67 0.545513
Target:  5'- gGACCCG-GGG-CACCguCAGCgcggaggucUGGCGCGa -3'
miRNA:   3'- -CUGGGCgCCCuGUGG--GUCG---------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 210242 0.67 0.544608
Target:  5'- cGACUCcuucagcugcauaGCGcGGACggGCCUucuguGGCCGGCGCGu -3'
miRNA:   3'- -CUGGG-------------CGC-CCUG--UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 129621 0.67 0.536482
Target:  5'- cGAgUCGCcGGcCGCCCGGCgGGUGCu -3'
miRNA:   3'- -CUgGGCGcCCuGUGGGUCGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 85221 0.67 0.536482
Target:  5'- cGGCgCCGCGccGGACAgagaCauggGGCCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGC--CCUGUg---Gg---UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 145954 0.67 0.536482
Target:  5'- cGAgCUGCuGGGcCGCCUcaacaucuaugAGCUGGCGCGc -3'
miRNA:   3'- -CUgGGCG-CCCuGUGGG-----------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 129603 0.67 0.536481
Target:  5'- uGACCCGUGu--CGCCCAcuuuCCGGCGCc -3'
miRNA:   3'- -CUGGGCGCccuGUGGGUc---GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 206363 0.67 0.536481
Target:  5'- uGGCCUGCGGcGACgACCCccaGGCCcGCaGCGc -3'
miRNA:   3'- -CUGGGCGCC-CUG-UGGG---UCGGcCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.