Results 81 - 100 of 210 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 29501 | 0.67 | 0.535581 |
Target: 5'- cGCCCGCGGGACcgccuguugACCCGcgaucucuGUCuaccccgcaugcaGGCGCGa -3' miRNA: 3'- cUGGGCGCCCUG---------UGGGU--------CGG-------------CCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 71027 | 0.67 | 0.535581 |
Target: 5'- aGACCgGCGGaGgauagucccucgaGCGCCCaaAGCgCGGCGCc -3' miRNA: 3'- -CUGGgCGCC-C-------------UGUGGG--UCG-GCCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 141937 | 0.67 | 0.527503 |
Target: 5'- uGACCgugcagCGCGuGGGCGCCCAccuGCUGG-GCGa -3' miRNA: 3'- -CUGG------GCGC-CCUGUGGGU---CGGCCgCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 88626 | 0.67 | 0.527503 |
Target: 5'- uGACCuCGUccGGGucacaGCCCAGCgaGGCGCa -3' miRNA: 3'- -CUGG-GCG--CCCug---UGGGUCGg-CCGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 224724 | 0.67 | 0.527503 |
Target: 5'- cGCCCGUGGugcucgccGACGCaggCGGCCaGCGCGu -3' miRNA: 3'- cUGGGCGCC--------CUGUGg--GUCGGcCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 13972 | 0.67 | 0.527502 |
Target: 5'- aGCCCuGauGGGCcuGCCCGGCgCGGCgGCGg -3' miRNA: 3'- cUGGG-CgcCCUG--UGGGUCG-GCCG-CGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 150911 | 0.67 | 0.527502 |
Target: 5'- cGCCUG-GGGAUcgaACCuCGGCuCGGUGCGg -3' miRNA: 3'- cUGGGCgCCCUG---UGG-GUCG-GCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 49002 | 0.67 | 0.527502 |
Target: 5'- cGugCUGCGGGACGCCgAGUCcaUGCa -3' miRNA: 3'- -CugGGCGCCCUGUGGgUCGGccGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 221339 | 0.67 | 0.51858 |
Target: 5'- cACCgaGCGGGccaccuGCACCUGGCCGcGCaGCGa -3' miRNA: 3'- cUGGg-CGCCC------UGUGGGUCGGC-CG-CGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 103497 | 0.67 | 0.51858 |
Target: 5'- cGCUgGCGaaaGGGCgaGCCCAGCagcaGGCGCGc -3' miRNA: 3'- cUGGgCGC---CCUG--UGGGUCGg---CCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 221889 | 0.67 | 0.51858 |
Target: 5'- gGGCgUGUGGGGCGgaUuGCCGGCGCGc -3' miRNA: 3'- -CUGgGCGCCCUGUggGuCGGCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 140332 | 0.67 | 0.51858 |
Target: 5'- cGCCCGCGGuGcCACCUGGC-GGCGg- -3' miRNA: 3'- cUGGGCGCC-CuGUGGGUCGgCCGCgc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 111203 | 0.67 | 0.517691 |
Target: 5'- cACCCGCcGGGCggccggcgacucgACUauuagagcgucgCGGCCGGCGCGg -3' miRNA: 3'- cUGGGCGcCCUG-------------UGG------------GUCGGCCGCGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 153077 | 0.68 | 0.509718 |
Target: 5'- --gCCGcCGGGGC-CCgGGCCGGgGCc -3' miRNA: 3'- cugGGC-GCCCUGuGGgUCGGCCgCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 43844 | 0.68 | 0.509718 |
Target: 5'- --gCCGCGGGcccgucacagGCGcCCCGGCCGGCu-- -3' miRNA: 3'- cugGGCGCCC----------UGU-GGGUCGGCCGcgc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 120932 | 0.68 | 0.509718 |
Target: 5'- uGCCCGCGGcGGCGgcUCCGGCgaGGgGCa -3' miRNA: 3'- cUGGGCGCC-CUGU--GGGUCGg-CCgCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 91178 | 0.68 | 0.509717 |
Target: 5'- aGCCCGCaccaGGaGAgCACCUcGCCGGCgGCGu -3' miRNA: 3'- cUGGGCG----CC-CU-GUGGGuCGGCCG-CGC- -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 120528 | 0.68 | 0.509717 |
Target: 5'- cGCCCG-GGGAaggGCCCucggcGGCCGGCGg- -3' miRNA: 3'- cUGGGCgCCCUg--UGGG-----UCGGCCGCgc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 2431 | 0.68 | 0.509717 |
Target: 5'- -cCCCGCuGGGACGCCCuGCaCGuucauccccGCGCc -3' miRNA: 3'- cuGGGCG-CCCUGUGGGuCG-GC---------CGCGc -5' |
|||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 75149 | 0.68 | 0.507071 |
Target: 5'- cGACCUG-GGGAUGCcuggacgcauggugCCAGCgCGGCGUGc -3' miRNA: 3'- -CUGGGCgCCCUGUG--------------GGUCG-GCCGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home