miRNA display CGI


Results 101 - 120 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 129497 0.68 0.501796
Target:  5'- uGGCgaGCGGGACACgucucuccucucuuaCAGuCCGGCGCu -3'
miRNA:   3'- -CUGggCGCCCUGUGg--------------GUC-GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 196750 0.68 0.50092
Target:  5'- cGCCUGCaccgucuGCugcCCCGGCCGGCGCGa -3'
miRNA:   3'- cUGGGCGccc----UGu--GGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 99612 0.68 0.50092
Target:  5'- uGACCUGCa--GCGCCCGG-CGGCGCa -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCgGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 19145 0.68 0.50092
Target:  5'- aGACCCacgGCGuGGugACCgAGagcaCGGCGCu -3'
miRNA:   3'- -CUGGG---CGC-CCugUGGgUCg---GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 103335 0.68 0.500919
Target:  5'- aGACCuCGCGGcGcCGCgaCAcGCCGGCGCc -3'
miRNA:   3'- -CUGG-GCGCC-CuGUGg-GU-CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 155383 0.68 0.500919
Target:  5'- cGCCgGCGcGGACgACgaGGCCGGCGgGg -3'
miRNA:   3'- cUGGgCGC-CCUG-UGggUCGGCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 211337 0.68 0.500919
Target:  5'- -uCCCGCGGGcGCGagugguugggguCCCgcagcAGCCGGuCGCGg -3'
miRNA:   3'- cuGGGCGCCC-UGU------------GGG-----UCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 66765 0.68 0.492189
Target:  5'- -uCCCGCGGGugAUgCcGCCGGCcCa -3'
miRNA:   3'- cuGGGCGCCCugUGgGuCGGCCGcGc -5'
14576 3' -65.6 NC_003521.1 + 235509 0.68 0.492189
Target:  5'- cGGCCgGCGGGGCACgCC-GCCc-CGCGa -3'
miRNA:   3'- -CUGGgCGCCCUGUG-GGuCGGccGCGC- -5'
14576 3' -65.6 NC_003521.1 + 3103 0.68 0.492189
Target:  5'- uGGCCCcCGGGuuCAUCCAGCCcGUGUGc -3'
miRNA:   3'- -CUGGGcGCCCu-GUGGGUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 117324 0.68 0.49132
Target:  5'- cGGCa-GCGGcgacgacGACACCCcGCCGGCGaCGg -3'
miRNA:   3'- -CUGggCGCC-------CUGUGGGuCGGCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 92181 0.68 0.49132
Target:  5'- -cCCCGCcgagcucGGGGCcguuuuucgccGCCCGGCCG-CGCGa -3'
miRNA:   3'- cuGGGCG-------CCCUG-----------UGGGUCGGCcGCGC- -5'
14576 3' -65.6 NC_003521.1 + 219269 0.68 0.489584
Target:  5'- gGGCCCGCaGGGGCuggcacaugagcggGCCCaugaaGGCCaGCGUGu -3'
miRNA:   3'- -CUGGGCG-CCCUG--------------UGGG-----UCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 188253 0.68 0.483529
Target:  5'- uGCCCGCGcGACGUCUucuGCCGGCGUc -3'
miRNA:   3'- cUGGGCGCcCUGUGGGu--CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 121888 0.68 0.483529
Target:  5'- uGGCCCuGaCGGGACgccgccGCCCAcGCCgcGGCGCc -3'
miRNA:   3'- -CUGGG-C-GCCCUG------UGGGU-CGG--CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 185214 0.68 0.483529
Target:  5'- gGGCCgCGCGGGACugCguGUacgacgaggagaCGGUGUGg -3'
miRNA:   3'- -CUGG-GCGCCCUGugGguCG------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 131088 0.68 0.474944
Target:  5'- cGGCUCGCGcgggcuccGGACGgCgGGgCGGCGCGg -3'
miRNA:   3'- -CUGGGCGC--------CCUGUgGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 226889 0.68 0.474944
Target:  5'- --gCUGCgGGGGCACCacggCGGCCaGCGCGg -3'
miRNA:   3'- cugGGCG-CCCUGUGG----GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 89011 0.68 0.474944
Target:  5'- --gCCGCGGG-C-CCCA-CCGGCGCc -3'
miRNA:   3'- cugGGCGCCCuGuGGGUcGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 45649 0.68 0.474944
Target:  5'- cGGCuCCGCGGGguccggcgcACACCCgcuaucaggGGCCGGacaccgaGCGg -3'
miRNA:   3'- -CUG-GGCGCCC---------UGUGGG---------UCGGCCg------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.