miRNA display CGI


Results 121 - 140 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 38260 0.68 0.474943
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGc -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 222046 0.68 0.474943
Target:  5'- uAUCgGCGGGGgGCaCCAGCCGuCGCa -3'
miRNA:   3'- cUGGgCGCCCUgUG-GGUCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 53848 0.68 0.466434
Target:  5'- -uUCCGCGcGACGgcgucCUCGGCCGGCGUGu -3'
miRNA:   3'- cuGGGCGCcCUGU-----GGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 88026 0.68 0.466434
Target:  5'- cACCUGCcGGugACCgAGgCGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCugUGGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 129054 0.68 0.466434
Target:  5'- -gUCCaCGaGGGCGCCCuugAGCUGGCGCa -3'
miRNA:   3'- cuGGGcGC-CCUGUGGG---UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 174073 0.68 0.466434
Target:  5'- cACCCGCGGGAUGucgUCCAGUcgCGGCaCGa -3'
miRNA:   3'- cUGGGCGCCCUGU---GGGUCG--GCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 112456 0.68 0.466434
Target:  5'- cGGCCCugGUGGGcGCGCCCGGCgGG-GCc -3'
miRNA:   3'- -CUGGG--CGCCC-UGUGGGUCGgCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 28143 0.68 0.466434
Target:  5'- uACCUGCGGGAUacgcuGCCCGuCUGGgGCa -3'
miRNA:   3'- cUGGGCGCCCUG-----UGGGUcGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 128400 0.68 0.463897
Target:  5'- cGCCUgaGCGGGcgucgguccgaaagGCGgCCGGUCGGCGCa -3'
miRNA:   3'- cUGGG--CGCCC--------------UGUgGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 85508 0.69 0.457166
Target:  5'- gGACCCGCGgucgucucacccaGGACGCCgaAGCCcauGGCGUu -3'
miRNA:   3'- -CUGGGCGC-------------CCUGUGGg-UCGG---CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 202081 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 1854 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 74583 0.69 0.449658
Target:  5'- gGAgCgGCGGcgcGGCGuCCCgcGGCCGGCGCGc -3'
miRNA:   3'- -CUgGgCGCC---CUGU-GGG--UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 42541 0.69 0.449658
Target:  5'- -cCCCaGCGGuccuccgcGACGCCCGGCUGGCuguccgGCGg -3'
miRNA:   3'- cuGGG-CGCC--------CUGUGGGUCGGCCG------CGC- -5'
14576 3' -65.6 NC_003521.1 + 127910 0.69 0.449657
Target:  5'- uGCCCGUgacGGGGCccuCCCAGgCGGCGa- -3'
miRNA:   3'- cUGGGCG---CCCUGu--GGGUCgGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 116632 0.69 0.449657
Target:  5'- gGGCCCGCuc-ACcCCCAGCCGGCagGCGc -3'
miRNA:   3'- -CUGGGCGcccUGuGGGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 166240 0.69 0.449657
Target:  5'- --gCCGCGGGACGCCgC-GCCGcCGCu -3'
miRNA:   3'- cugGGCGCCCUGUGG-GuCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 91954 0.69 0.448828
Target:  5'- gGACCCcguggcgGCGaGGGCggaACCCGGCggccgaucCGGCGCGa -3'
miRNA:   3'- -CUGGG-------CGC-CCUG---UGGGUCG--------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 201379 0.69 0.441395
Target:  5'- cGGCCCuCGGcGCcggGCUCGGCCGGCaGCGg -3'
miRNA:   3'- -CUGGGcGCCcUG---UGGGUCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 90546 0.69 0.441395
Target:  5'- -cCCCGCGacaGCACCCacgagaGGCCGGcCGCGg -3'
miRNA:   3'- cuGGGCGCcc-UGUGGG------UCGGCC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.