miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 79 0.67 0.554593
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 1854 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 1958 1.06 0.001162
Target:  5'- gGACCCGCGGGACACCCAGCCGGCGCGc -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 2431 0.68 0.509717
Target:  5'- -cCCCGCuGGGACGCCCuGCaCGuucauccccGCGCc -3'
miRNA:   3'- cuGGGCG-CCCUGUGGGuCG-GC---------CGCGc -5'
14576 3' -65.6 NC_003521.1 + 3103 0.68 0.492189
Target:  5'- uGGCCCcCGGGuuCAUCCAGCCcGUGUGc -3'
miRNA:   3'- -CUGGGcGCCCu-GUGGGUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 3974 0.67 0.545513
Target:  5'- gGACCCG-GGG-CACCguCAGCgcggaggucUGGCGCGa -3'
miRNA:   3'- -CUGGGCgCCCuGUGG--GUCG---------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 5310 0.67 0.545513
Target:  5'- -uUUCGCGGGGgcggcgUGCCCcGCCGGcCGCGa -3'
miRNA:   3'- cuGGGCGCCCU------GUGGGuCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 8628 0.7 0.378568
Target:  5'- cACCCGCGGGG-GCCCA--UGGCGUGg -3'
miRNA:   3'- cUGGGCGCCCUgUGGGUcgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 10497 0.72 0.30252
Target:  5'- cGCCgGCGGGGauggcguggcCcCCCAGgCGGCGCGa -3'
miRNA:   3'- cUGGgCGCCCU----------GuGGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 13972 0.67 0.527502
Target:  5'- aGCCCuGauGGGCcuGCCCGGCgCGGCgGCGg -3'
miRNA:   3'- cUGGG-CgcCCUG--UGGGUCG-GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 14353 0.66 0.637706
Target:  5'- cGACCaguaccuggUGCuGGugGCCCacaaccuggacgAGCUGGCGCGc -3'
miRNA:   3'- -CUGG---------GCGcCCugUGGG------------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 14535 0.7 0.378568
Target:  5'- cGCCCGaGGGcucguACGCCaCGGCCGaGCGCa -3'
miRNA:   3'- cUGGGCgCCC-----UGUGG-GUCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 15213 0.72 0.302519
Target:  5'- cGACaUCGUGGGGCugCaggCGGCCGaGCGCGa -3'
miRNA:   3'- -CUG-GGCGCCCUGugG---GUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 16203 0.67 0.554593
Target:  5'- uGGCCCuucgagGUGGcGGCGCCCugccgccuGGCCGaGUGCGa -3'
miRNA:   3'- -CUGGG------CGCC-CUGUGGG--------UCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 17119 0.67 0.554594
Target:  5'- uACCCgGCGaGGucguCgAUCCuGCCGGCGCGc -3'
miRNA:   3'- cUGGG-CGC-CCu---G-UGGGuCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 17419 0.66 0.591307
Target:  5'- cGCCgCGcCGGGGCGCCacaCGGCCcgcgucggGGCGCc -3'
miRNA:   3'- cUGG-GC-GCCCUGUGG---GUCGG--------CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 18071 0.69 0.40923
Target:  5'- cGACgCCGUGGccguaGCCCAGaCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGCCcug--UGGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 18686 0.66 0.628411
Target:  5'- -gUCUG-GGGuuuCGCCaUGGCCGGCGCGa -3'
miRNA:   3'- cuGGGCgCCCu--GUGG-GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 19114 0.66 0.637706
Target:  5'- aGACgaCGCGGGugGCgggCC-GCCGGUGUa -3'
miRNA:   3'- -CUGg-GCGCCCugUG---GGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 19145 0.68 0.50092
Target:  5'- aGACCCacgGCGuGGugACCgAGagcaCGGCGCu -3'
miRNA:   3'- -CUGGG---CGC-CCugUGGgUCg---GCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.