miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 24162 0.74 0.223477
Target:  5'- uACUCGCGGGGCACUCggaaaggagcgaAGCCGG-GCGg -3'
miRNA:   3'- cUGGGCGCCCUGUGGG------------UCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 24406 0.71 0.322032
Target:  5'- gGGCCCGCGGaGCAUagaaagCCAGaCGGCGCa -3'
miRNA:   3'- -CUGGGCGCCcUGUG------GGUCgGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 25394 0.66 0.632129
Target:  5'- cACCCGCGgcucugcuucacggaGGGCucGCCCAGCCucaccuuccuGGUGCc -3'
miRNA:   3'- cUGGGCGC---------------CCUG--UGGGUCGG----------CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 26728 0.66 0.590383
Target:  5'- cACCCuGCuGGuccuGACGCCCgugauguGGUCGGCGCGc -3'
miRNA:   3'- cUGGG-CG-CC----CUGUGGG-------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 28143 0.68 0.466434
Target:  5'- uACCUGCGGGAUacgcuGCCCGuCUGGgGCa -3'
miRNA:   3'- cUGGGCGCCCUG-----UGGGUcGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 29501 0.67 0.535581
Target:  5'- cGCCCGCGGGACcgccuguugACCCGcgaucucuGUCuaccccgcaugcaGGCGCGa -3'
miRNA:   3'- cUGGGCGCCCUG---------UGGGU--------CGG-------------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 30828 0.66 0.609831
Target:  5'- aACCCGCGaacuccacGGGCGCCUuGCgaCGGCaGCGg -3'
miRNA:   3'- cUGGGCGC--------CCUGUGGGuCG--GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 32079 0.69 0.41634
Target:  5'- uGGCCCGUGGccACGgCCAGCgccaugcguuuggCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCc-UGUgGGUCG-------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36155 0.66 0.609831
Target:  5'- uGCCCGaggagGaGGACAcCCCGGaCGGCGUGc -3'
miRNA:   3'- cUGGGCg----C-CCUGU-GGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36228 0.7 0.393706
Target:  5'- gGACCCcgaGCaGGACuACCgAcuGCCGGCGCGc -3'
miRNA:   3'- -CUGGG---CGcCCUG-UGGgU--CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36304 0.67 0.563717
Target:  5'- aGGCCgGgUGGGGCGCacccuCAGUCGGgGCGu -3'
miRNA:   3'- -CUGGgC-GCCCUGUGg----GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 38260 0.68 0.474943
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGc -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 38403 0.67 0.572882
Target:  5'- aGACCCcaUGGGuuGCGCCUGGCUuuucaccgggGGCGCGg -3'
miRNA:   3'- -CUGGGc-GCCC--UGUGGGUCGG----------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 39241 0.71 0.324703
Target:  5'- uGGCCCGCGGcGCGuucagcCCCAGCCGGUuggaccgauacagccGCGc -3'
miRNA:   3'- -CUGGGCGCCcUGU------GGGUCGGCCG---------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 39801 0.7 0.377822
Target:  5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3'
miRNA:   3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 39895 0.69 0.433218
Target:  5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGa -3'
miRNA:   3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 42541 0.69 0.449658
Target:  5'- -cCCCaGCGGuccuccgcGACGCCCGGCUGGCuguccgGCGg -3'
miRNA:   3'- cuGGG-CGCC--------CUGUGGGUCGGCCG------CGC- -5'
14576 3' -65.6 NC_003521.1 + 43844 0.68 0.509718
Target:  5'- --gCCGCGGGcccgucacagGCGcCCCGGCCGGCu-- -3'
miRNA:   3'- cugGGCGCCC----------UGU-GGGUCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 44056 0.76 0.174321
Target:  5'- cGCCCGCGGu-CGCgCCGGCCGGgGCa -3'
miRNA:   3'- cUGGGCGCCcuGUG-GGUCGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 44166 0.69 0.425132
Target:  5'- gGACCUGC---GCACCCAGCUGGaCGUGc -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCGGCC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.