miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 74583 0.69 0.449658
Target:  5'- gGAgCgGCGGcgcGGCGuCCCgcGGCCGGCGCGc -3'
miRNA:   3'- -CUgGgCGCC---CUGU-GGG--UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 75149 0.68 0.507071
Target:  5'- cGACCUG-GGGAUGCcuggacgcauggugCCAGCgCGGCGUGc -3'
miRNA:   3'- -CUGGGCgCCCUGUG--------------GGUCG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 80108 0.67 0.563718
Target:  5'- cGACCaCGauguuGGGAgCGCCCuuguguuuuugcGGCCGGUGCu -3'
miRNA:   3'- -CUGG-GCg----CCCU-GUGGG------------UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 82746 0.66 0.624692
Target:  5'- cGCuuGCGGGACGagaucacgcgcgaCCGGCgGGcCGUGg -3'
miRNA:   3'- cUGggCGCCCUGUg------------GGUCGgCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 85167 0.66 0.62841
Target:  5'- aGACCUcCGccGcCACCCAGCaCGGCGCu -3'
miRNA:   3'- -CUGGGcGCc-CuGUGGGUCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 85221 0.67 0.536482
Target:  5'- cGGCgCCGCGccGGACAgagaCauggGGCCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGC--CCUGUg---Gg---UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 85334 0.75 0.204363
Target:  5'- uGGCCCGCGGccCGCCgcaGGCCGGCGUc -3'
miRNA:   3'- -CUGGGCGCCcuGUGGg--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 85390 0.66 0.613544
Target:  5'- cGCCCaGCGGGuCGgCCAGCuCgcacagcuccugguaGGCGCGc -3'
miRNA:   3'- cUGGG-CGCCCuGUgGGUCG-G---------------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 85508 0.69 0.457166
Target:  5'- gGACCCGCGgucgucucacccaGGACGCCgaAGCCcauGGCGUu -3'
miRNA:   3'- -CUGGGCGC-------------CCUGUGGg-UCGG---CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 88026 0.68 0.466434
Target:  5'- cACCUGCcGGugACCgAGgCGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCugUGGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 88084 0.67 0.554593
Target:  5'- uGCCCGUGgaGGACAaCCGGCUGGUGg- -3'
miRNA:   3'- cUGGGCGC--CCUGUgGGUCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 88548 0.66 0.60056
Target:  5'- cGGCCUccuCGGGGCAgggcaCCAGCUGGCccGCGu -3'
miRNA:   3'- -CUGGGc--GCCCUGUg----GGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 88626 0.67 0.527503
Target:  5'- uGACCuCGUccGGGucacaGCCCAGCgaGGCGCa -3'
miRNA:   3'- -CUGG-GCG--CCCug---UGGGUCGg-CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 88779 0.67 0.572881
Target:  5'- gGACCUGCGGGugaaGCACCgcugCGGCCuGGUGa- -3'
miRNA:   3'- -CUGGGCGCCC----UGUGG----GUCGG-CCGCgc -5'
14576 3' -65.6 NC_003521.1 + 89011 0.68 0.474944
Target:  5'- --gCCGCGGG-C-CCCA-CCGGCGCc -3'
miRNA:   3'- cugGGCGCCCuGuGGGUcGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 89736 0.66 0.62841
Target:  5'- gGGCaCG-GGGGCGgUgacggCAGCCGGCGCGg -3'
miRNA:   3'- -CUGgGCgCCCUGUgG-----GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 90311 0.66 0.637706
Target:  5'- -uCCCGCuccuagcaGGGC-CCC-GCCGGCGCc -3'
miRNA:   3'- cuGGGCGc-------CCUGuGGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 90546 0.69 0.441395
Target:  5'- -cCCCGCGacaGCACCCacgagaGGCCGGcCGCGg -3'
miRNA:   3'- cuGGGCGCcc-UGUGGG------UCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 91178 0.68 0.509717
Target:  5'- aGCCCGCaccaGGaGAgCACCUcGCCGGCgGCGu -3'
miRNA:   3'- cUGGGCG----CC-CU-GUGGGuCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 91767 0.73 0.247854
Target:  5'- -cCCCGCGGGucccgcauccccccACACCCGGgCGGCGg- -3'
miRNA:   3'- cuGGGCGCCC--------------UGUGGGUCgGCCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.