miRNA display CGI


Results 81 - 100 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 91954 0.69 0.448828
Target:  5'- gGACCCcguggcgGCGaGGGCggaACCCGGCggccgaucCGGCGCGa -3'
miRNA:   3'- -CUGGG-------CGC-CCUG---UGGGUCG--------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92181 0.68 0.49132
Target:  5'- -cCCCGCcgagcucGGGGCcguuuuucgccGCCCGGCCG-CGCGa -3'
miRNA:   3'- cuGGGCG-------CCCUG-----------UGGGUCGGCcGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92236 0.7 0.401421
Target:  5'- gGGCCCGaCGGG-CGCCgcgcggucuuuUGGCCGGuCGCGu -3'
miRNA:   3'- -CUGGGC-GCCCuGUGG-----------GUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 92355 0.78 0.128221
Target:  5'- cGACCCGCGGGcuuuucgucaucagcACGCaCCGgccaccccuggagccGCCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCC---------------UGUG-GGU---------------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92471 0.69 0.417135
Target:  5'- uGCCCGCucgGGGGuCuCCCAGCCucuccgGGCGUGg -3'
miRNA:   3'- cUGGGCG---CCCU-GuGGGUCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 95164 0.72 0.302519
Target:  5'- aACUCGCGGGccgaggGCACCuCGcGCuCGGCGCGg -3'
miRNA:   3'- cUGGGCGCCC------UGUGG-GU-CG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 95506 0.66 0.596856
Target:  5'- aGGCCCucGUGcuucaggccgaacuGGAUGCCCGgcgagacGCCGGCGCGc -3'
miRNA:   3'- -CUGGG--CGC--------------CCUGUGGGU-------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 99612 0.68 0.50092
Target:  5'- uGACCUGCa--GCGCCCGG-CGGCGCa -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCgGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 101438 0.66 0.62841
Target:  5'- cGACcaCCGCGGGGC-CaagAGCaCGGCGCu -3'
miRNA:   3'- -CUG--GGCGCCCUGuGgg-UCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 101908 0.73 0.254975
Target:  5'- --gCCGUGGuccGACACCgAGCCGGCGUa -3'
miRNA:   3'- cugGGCGCC---CUGUGGgUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 102774 0.67 0.554593
Target:  5'- cGGCggUCGCGGGcgacccACGCCCcgugcGCCGGCaGCGa -3'
miRNA:   3'- -CUG--GGCGCCC------UGUGGGu----CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 102975 0.76 0.166489
Target:  5'- gGGCUCugGCGGGGCgGCCCAGCCgcGGCGUGa -3'
miRNA:   3'- -CUGGG--CGCCCUG-UGGGUCGG--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103130 0.67 0.554594
Target:  5'- aGGCUgGUGGGGagaGCCCaggGGCagcaGGCGCGu -3'
miRNA:   3'- -CUGGgCGCCCUg--UGGG---UCGg---CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103335 0.68 0.500919
Target:  5'- aGACCuCGCGGcGcCGCgaCAcGCCGGCGCc -3'
miRNA:   3'- -CUGG-GCGCC-CuGUGg-GU-CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 103497 0.67 0.51858
Target:  5'- cGCUgGCGaaaGGGCgaGCCCAGCagcaGGCGCGc -3'
miRNA:   3'- cUGGgCGC---CCUG--UGGGUCGg---CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103574 0.71 0.356606
Target:  5'- uGCCCGCuGccgccgucGGC-CCCGGCCGGUGCGc -3'
miRNA:   3'- cUGGGCGcC--------CUGuGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 104903 0.66 0.609831
Target:  5'- -uCCCGCGGccGugGCCgaGGCCGGCa-- -3'
miRNA:   3'- cuGGGCGCC--CugUGGg-UCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 105453 0.73 0.266256
Target:  5'- cGCCCGCGGGcgauaacCGCCgCGGagaCGGCGCGc -3'
miRNA:   3'- cUGGGCGCCCu------GUGG-GUCg--GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 106569 0.69 0.433218
Target:  5'- aACCUGCaccGGGuCACCCuGGCCgagggcGGCGCGg -3'
miRNA:   3'- cUGGGCG---CCCuGUGGG-UCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 106754 0.66 0.609831
Target:  5'- -cUCCGCGuccaGGGCGCCCAGgCGGUcgaaaccagGCGu -3'
miRNA:   3'- cuGGGCGC----CCUGUGGGUCgGCCG---------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.