miRNA display CGI


Results 101 - 120 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 106859 0.66 0.591307
Target:  5'- -gUCCGCGcauGGACGCCCGuaCGGUGaCGg -3'
miRNA:   3'- cuGGGCGC---CCUGUGGGUcgGCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 109992 0.69 0.41634
Target:  5'- cGGCCUgccgguccagcagGCGGGagauguGCACCCGGCUcucgugGGCGCGc -3'
miRNA:   3'- -CUGGG-------------CGCCC------UGUGGGUCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 110627 0.66 0.637706
Target:  5'- --aCCGCGGGcaucgGCAUCUcGCCGgGCGCc -3'
miRNA:   3'- cugGGCGCCC-----UGUGGGuCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 111203 0.67 0.517691
Target:  5'- cACCCGCcGGGCggccggcgacucgACUauuagagcgucgCGGCCGGCGCGg -3'
miRNA:   3'- cUGGGCGcCCUG-------------UGG------------GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 112456 0.68 0.466434
Target:  5'- cGGCCCugGUGGGcGCGCCCGGCgGG-GCc -3'
miRNA:   3'- -CUGGG--CGCCC-UGUGGGUCGgCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 113845 0.72 0.296221
Target:  5'- cGGCa-GCGGGGCGgCCGGCgacgaCGGCGCGg -3'
miRNA:   3'- -CUGggCGCCCUGUgGGUCG-----GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 115335 0.66 0.62841
Target:  5'- gGGCCUGauGGAgACCaagaugaaGGgCGGCGCGg -3'
miRNA:   3'- -CUGGGCgcCCUgUGGg-------UCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 115804 0.66 0.609831
Target:  5'- uACCCGC-GGAUGCgCAGCCugcuGCGCa -3'
miRNA:   3'- cUGGGCGcCCUGUGgGUCGGc---CGCGc -5'
14576 3' -65.6 NC_003521.1 + 115813 0.71 0.31477
Target:  5'- cGCCgcucaggCGCGGGugGCUCAGCaGGCGCu -3'
miRNA:   3'- cUGG-------GCGCCCugUGGGUCGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 116632 0.69 0.449657
Target:  5'- gGGCCCGCuc-ACcCCCAGCCGGCagGCGc -3'
miRNA:   3'- -CUGGGCGcccUGuGGGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 117324 0.68 0.49132
Target:  5'- cGGCa-GCGGcgacgacGACACCCcGCCGGCGaCGg -3'
miRNA:   3'- -CUGggCGCC-------CUGUGGGuCGGCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 120528 0.68 0.509717
Target:  5'- cGCCCG-GGGAaggGCCCucggcGGCCGGCGg- -3'
miRNA:   3'- cUGGGCgCCCUg--UGGG-----UCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 120932 0.68 0.509718
Target:  5'- uGCCCGCGGcGGCGgcUCCGGCgaGGgGCa -3'
miRNA:   3'- cUGGGCGCC-CUGU--GGGUCGg-CCgCGc -5'
14576 3' -65.6 NC_003521.1 + 121888 0.68 0.483529
Target:  5'- uGGCCCuGaCGGGACgccgccGCCCAcGCCgcGGCGCc -3'
miRNA:   3'- -CUGGG-C-GCCCUG------UGGGU-CGG--CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 123338 0.66 0.637706
Target:  5'- -cCCCGCcGGACagGCCCGucGCCgGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCUG--UGGGU--CGG-CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 127295 0.67 0.563717
Target:  5'- cGGCgCGaGGGAU-CCCAGCCGcuGCGCa -3'
miRNA:   3'- -CUGgGCgCCCUGuGGGUCGGC--CGCGc -5'
14576 3' -65.6 NC_003521.1 + 127910 0.69 0.449657
Target:  5'- uGCCCGUgacGGGGCccuCCCAGgCGGCGa- -3'
miRNA:   3'- cUGGGCG---CCCUGu--GGGUCgGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 128400 0.68 0.463897
Target:  5'- cGCCUgaGCGGGcgucgguccgaaagGCGgCCGGUCGGCGCa -3'
miRNA:   3'- cUGGG--CGCCC--------------UGUgGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129054 0.68 0.466434
Target:  5'- -gUCCaCGaGGGCGCCCuugAGCUGGCGCa -3'
miRNA:   3'- cuGGGcGC-CCUGUGGG---UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129102 0.66 0.60056
Target:  5'- --gCUGUGGGugG-CguGCCGGCGCa -3'
miRNA:   3'- cugGGCGCCCugUgGguCGGCCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.