miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 240628 0.67 0.554593
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 240122 0.69 0.417135
Target:  5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGg -3'
miRNA:   3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 240028 0.7 0.377822
Target:  5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3'
miRNA:   3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 239469 0.71 0.324704
Target:  5'- uGGCCCGCGGcGCGuucagcCCCAGCCGGUuggaccgauacagccGCGc -3'
miRNA:   3'- -CUGGGCGCCcUGU------GGGUCGGCCG---------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 238488 0.69 0.417135
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGa -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 235509 0.68 0.492189
Target:  5'- cGGCCgGCGGGGCACgCC-GCCc-CGCGa -3'
miRNA:   3'- -CUGGgCGCCCUGUG-GGuCGGccGCGC- -5'
14576 3' -65.6 NC_003521.1 + 230321 0.73 0.249483
Target:  5'- cGCCUGgGGGGCcacgccauCCCcGCCGGCGCa -3'
miRNA:   3'- cUGGGCgCCCUGu-------GGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 229055 0.66 0.62841
Target:  5'- -cCCCaCGaGGACgaaggcagucACCCAGgCGGCGUGg -3'
miRNA:   3'- cuGGGcGC-CCUG----------UGGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 226889 0.68 0.474944
Target:  5'- --gCUGCgGGGGCACCacggCGGCCaGCGCGg -3'
miRNA:   3'- cugGGCG-CCCUGUGG----GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 224724 0.67 0.527503
Target:  5'- cGCCCGUGGugcucgccGACGCaggCGGCCaGCGCGu -3'
miRNA:   3'- cUGGGCGCC--------CUGUGg--GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 223393 0.66 0.599634
Target:  5'- cGCCCcgacGCGGGccgugugGCGcCCCGGCgCGGCGUc -3'
miRNA:   3'- cUGGG----CGCCC-------UGU-GGGUCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 222046 0.68 0.474943
Target:  5'- uAUCgGCGGGGgGCaCCAGCCGuCGCa -3'
miRNA:   3'- cUGGgCGCCCUgUG-GGUCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 221889 0.67 0.51858
Target:  5'- gGGCgUGUGGGGCGgaUuGCCGGCGCGc -3'
miRNA:   3'- -CUGgGCGCCCUGUggGuCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 221339 0.67 0.51858
Target:  5'- cACCgaGCGGGccaccuGCACCUGGCCGcGCaGCGa -3'
miRNA:   3'- cUGGg-CGCCC------UGUGGGUCGGC-CG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 219269 0.68 0.489584
Target:  5'- gGGCCCGCaGGGGCuggcacaugagcggGCCCaugaaGGCCaGCGUGu -3'
miRNA:   3'- -CUGGGCG-CCCUG--------------UGGG-----UCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 217607 0.66 0.637706
Target:  5'- gGACCaGCaGGGGCGuCUCGGCCgccaucuccucGGCGUGg -3'
miRNA:   3'- -CUGGgCG-CCCUGU-GGGUCGG-----------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 217406 0.66 0.60056
Target:  5'- aGGCUgaGCGGcGGCAUgaAGCCGGUGCa -3'
miRNA:   3'- -CUGGg-CGCC-CUGUGggUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 216869 0.66 0.61633
Target:  5'- aGGCCCguggaGCGGGACAUCCAgGCCauccaGGCcaccagcuugucguGCGa -3'
miRNA:   3'- -CUGGG-----CGCCCUGUGGGU-CGG-----CCG--------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 214809 0.66 0.582079
Target:  5'- --gCCGUcGGGCGCCgGGCgCGGCGaCGg -3'
miRNA:   3'- cugGGCGcCCUGUGGgUCG-GCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 214610 0.66 0.582079
Target:  5'- aGAgCUGCGGGuaGCCCAGCCagaccaGCGUGc -3'
miRNA:   3'- -CUgGGCGCCCugUGGGUCGGc-----CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.