miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 213713 0.74 0.223477
Target:  5'- gGGCCuCG-GGGAUGCCCAGCCagacGGCGCc -3'
miRNA:   3'- -CUGG-GCgCCCUGUGGGUCGG----CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 212335 0.66 0.60056
Target:  5'- aGCCCGaCGGucACGCCCAucaccacccGCUGGUGCa -3'
miRNA:   3'- cUGGGC-GCCc-UGUGGGU---------CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 211337 0.68 0.500919
Target:  5'- -uCCCGCGGGcGCGagugguugggguCCCgcagcAGCCGGuCGCGg -3'
miRNA:   3'- cuGGGCGCCC-UGU------------GGG-----UCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 210595 0.66 0.60056
Target:  5'- gGACCUGCaGcGcGACGCCaaCGGCCGGC-CGa -3'
miRNA:   3'- -CUGGGCG-C-C-CUGUGG--GUCGGCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 210242 0.67 0.544608
Target:  5'- cGACUCcuucagcugcauaGCGcGGACggGCCUucuguGGCCGGCGCGu -3'
miRNA:   3'- -CUGGG-------------CGC-CCUG--UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 207769 0.7 0.376332
Target:  5'- gGACCCGCuGGGcgGCAUCCacgugcugcucuauGGCaCGGCGCu -3'
miRNA:   3'- -CUGGGCG-CCC--UGUGGG--------------UCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 207336 0.67 0.563718
Target:  5'- -cUUCGgGGGGCGcguCCCucgGGUCGGCGCGg -3'
miRNA:   3'- cuGGGCgCCCUGU---GGG---UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 206363 0.67 0.536481
Target:  5'- uGGCCUGCGGcGACgACCCccaGGCCcGCaGCGc -3'
miRNA:   3'- -CUGGGCGCC-CUG-UGGG---UCGGcCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 204307 0.71 0.335554
Target:  5'- cGACCgGCGGGugACCgCAGuCCGaCGCc -3'
miRNA:   3'- -CUGGgCGCCCugUGG-GUC-GGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 204008 0.67 0.563717
Target:  5'- cGGCCCGUGGcgcGugAUCaCGGCCugcccgaaaGGCGCGu -3'
miRNA:   3'- -CUGGGCGCC---CugUGG-GUCGG---------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 202185 1.06 0.001162
Target:  5'- gGACCCGCGGGACACCCAGCCGGCGCGc -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 202081 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 201594 0.69 0.425132
Target:  5'- cGCCCGCGGGcCACCgCuguccccgAGCCcGCGCu -3'
miRNA:   3'- cUGGGCGCCCuGUGG-G--------UCGGcCGCGc -5'
14576 3' -65.6 NC_003521.1 + 201379 0.69 0.441395
Target:  5'- cGGCCCuCGGcGCcggGCUCGGCCGGCaGCGg -3'
miRNA:   3'- -CUGGGcGCCcUG---UGGGUCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 200307 0.67 0.554594
Target:  5'- cGugCgGCGGGcCGgCCGGUCGGaCGUGu -3'
miRNA:   3'- -CugGgCGCCCuGUgGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 198266 0.71 0.335554
Target:  5'- --gCCGCcGGACAgCCAGCCGGgcguCGCGg -3'
miRNA:   3'- cugGGCGcCCUGUgGGUCGGCC----GCGC- -5'
14576 3' -65.6 NC_003521.1 + 196963 0.75 0.203904
Target:  5'- cGGCCCGggagccggcCGGGGCGCCUgugacgggcccgcGGCCGGCgGCGg -3'
miRNA:   3'- -CUGGGC---------GCCCUGUGGG-------------UCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 196880 0.69 0.409231
Target:  5'- cGGCaCCGCGGGugA---GGCCGGgGCGg -3'
miRNA:   3'- -CUG-GGCGCCCugUgggUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 196750 0.68 0.50092
Target:  5'- cGCCUGCaccgucuGCugcCCCGGCCGGCGCGa -3'
miRNA:   3'- cUGGGCGccc----UGu--GGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 195685 0.76 0.155333
Target:  5'- aGAUCUGCGGGAUGUCCuGCCGGUGCa -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGuCGGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.