miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 191560 0.66 0.582079
Target:  5'- uACgUGCGGGcCAUCCuagaGGCCGaGCGCa -3'
miRNA:   3'- cUGgGCGCCCuGUGGG----UCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 188253 0.68 0.483529
Target:  5'- uGCCCGCGcGACGUCUucuGCCGGCGUc -3'
miRNA:   3'- cUGGGCGCcCUGUGGGu--CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 187616 0.7 0.378568
Target:  5'- cGGCCUGCcGGGCgaGCCgGGCCGcGCGCc -3'
miRNA:   3'- -CUGGGCGcCCUG--UGGgUCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 187192 0.67 0.545513
Target:  5'- cGGCCCGCcugcaucgGGGACAUUC-GUCGGCGg- -3'
miRNA:   3'- -CUGGGCG--------CCCUGUGGGuCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 186540 0.69 0.425132
Target:  5'- gGGCuCCGUGGGAgGCagGGCCGGCaCGa -3'
miRNA:   3'- -CUG-GGCGCCCUgUGggUCGGCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 186295 0.66 0.637706
Target:  5'- --gCCGCcGGGC-CCCAGC-GGCGCc -3'
miRNA:   3'- cugGGCGcCCUGuGGGUCGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 185626 0.66 0.619117
Target:  5'- aGCCgGC-GGACugCCAucGCCGGuCGUGu -3'
miRNA:   3'- cUGGgCGcCCUGugGGU--CGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 185214 0.68 0.483529
Target:  5'- gGGCCgCGCGGGACugCguGUacgacgaggagaCGGUGUGg -3'
miRNA:   3'- -CUGG-GCGCCCUGugGguCG------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 181450 0.66 0.591307
Target:  5'- aGugCUGCGcGGCGuCCagCGGCUGGCGCGc -3'
miRNA:   3'- -CugGGCGCcCUGU-GG--GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 178790 0.75 0.190972
Target:  5'- -gUCCGCGGGACgggcgaggcauGCCCGGCgGGCGgGu -3'
miRNA:   3'- cuGGGCGCCCUG-----------UGGGUCGgCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 174073 0.68 0.466434
Target:  5'- cACCCGCGGGAUGucgUCCAGUcgCGGCaCGa -3'
miRNA:   3'- cUGGGCGCCCUGU---GGGUCG--GCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 173256 0.77 0.138238
Target:  5'- uGGCCCGCGGGGCccGCCgccugacaCAGuuGGCGCa -3'
miRNA:   3'- -CUGGGCGCCCUG--UGG--------GUCggCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 172306 0.66 0.637706
Target:  5'- -gUCCGguguCGGuGGCGCCaGGCCGGuCGCGg -3'
miRNA:   3'- cuGGGC----GCC-CUGUGGgUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 170715 0.69 0.441395
Target:  5'- cGGCCCuuCGGcGGCACgCCGGCCaGGUGCc -3'
miRNA:   3'- -CUGGGc-GCC-CUGUG-GGUCGG-CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 169312 0.66 0.60056
Target:  5'- cGGCCgGCGucGGuCGCagcgucgCGGCCGGCGUGg -3'
miRNA:   3'- -CUGGgCGC--CCuGUGg------GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 168078 0.66 0.609831
Target:  5'- aGACgCGgGGGGCugCagaGGUCGGCGa- -3'
miRNA:   3'- -CUGgGCgCCCUGugGg--UCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 166240 0.69 0.449657
Target:  5'- --gCCGCGGGACGCCgC-GCCGcCGCu -3'
miRNA:   3'- cugGGCGCCCUGUGG-GuCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 165996 0.66 0.582079
Target:  5'- ---gCGCGGGACGCCgucgcGCuCGGCGCc -3'
miRNA:   3'- cuggGCGCCCUGUGGgu---CG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 165958 0.7 0.376332
Target:  5'- cGugUCGUgcucGGGcaggcugaggaagcGCACCCAGUCGGCGCu -3'
miRNA:   3'- -CugGGCG----CCC--------------UGUGGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 164822 0.76 0.174321
Target:  5'- cGCCCGCGGGGgaggaggaACCggCGGCCGGCGCc -3'
miRNA:   3'- cUGGGCGCCCUg-------UGG--GUCGGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.