miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 162905 0.76 0.170364
Target:  5'- uGCCUGCaGGACGCCCuGuuGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCUGUGGGuCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 161969 0.66 0.582079
Target:  5'- cGACCgGCGGaucacCACCUucGGCUGGUGCu -3'
miRNA:   3'- -CUGGgCGCCcu---GUGGG--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 155383 0.68 0.500919
Target:  5'- cGCCgGCGcGGACgACgaGGCCGGCGgGg -3'
miRNA:   3'- cUGGgCGC-CCUG-UGggUCGGCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 155325 0.71 0.356606
Target:  5'- aGACgaCCGCGGGu--CCCGGCgggGGCGCGg -3'
miRNA:   3'- -CUG--GGCGCCCuguGGGUCGg--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 153584 0.66 0.591307
Target:  5'- uGACCgGCGaGGACACggucaacgUCAGCgGGCGg- -3'
miRNA:   3'- -CUGGgCGC-CCUGUG--------GGUCGgCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 153077 0.68 0.509718
Target:  5'- --gCCGcCGGGGC-CCgGGCCGGgGCc -3'
miRNA:   3'- cugGGC-GCCCUGuGGgUCGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 152343 0.73 0.249483
Target:  5'- gGGCCCGCGccGACGCugcucuggggCCGGCCGGgGCGg -3'
miRNA:   3'- -CUGGGCGCc-CUGUG----------GGUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 150911 0.67 0.527502
Target:  5'- cGCCUG-GGGAUcgaACCuCGGCuCGGUGCGg -3'
miRNA:   3'- cUGGGCgCCCUG---UGG-GUCG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 150765 0.67 0.545513
Target:  5'- cGCCCGCGuGuGCGCUCgcgcgacgacgGGCgGGCGCGa -3'
miRNA:   3'- cUGGGCGC-CcUGUGGG-----------UCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 148917 0.67 0.558238
Target:  5'- --gCCGCGGcaucgagcaccgcaGCGCCguGCUGGCGCGu -3'
miRNA:   3'- cugGGCGCCc-------------UGUGGguCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 148612 0.69 0.425131
Target:  5'- gGACCC-CGGGAC-CCgAGCaGGgGCGg -3'
miRNA:   3'- -CUGGGcGCCCUGuGGgUCGgCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 145954 0.67 0.536482
Target:  5'- cGAgCUGCuGGGcCGCCUcaacaucuaugAGCUGGCGCGc -3'
miRNA:   3'- -CUgGGCG-CCCuGUGGG-----------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 145864 0.66 0.582079
Target:  5'- gGGCCCggcgGCGGGcgGCGCCgAcgacgaggccGCCGGCgGCGg -3'
miRNA:   3'- -CUGGG----CGCCC--UGUGGgU----------CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 142288 0.7 0.400645
Target:  5'- gGACCCGcCGccGCugcagcgGCCCAGCCGcGCGCGu -3'
miRNA:   3'- -CUGGGC-GCccUG-------UGGGUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 141937 0.67 0.527503
Target:  5'- uGACCgugcagCGCGuGGGCGCCCAccuGCUGG-GCGa -3'
miRNA:   3'- -CUGG------GCGC-CCUGUGGGU---CGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 140332 0.67 0.51858
Target:  5'- cGCCCGCGGuGcCACCUGGC-GGCGg- -3'
miRNA:   3'- cUGGGCGCC-CuGUGGGUCGgCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 137296 0.71 0.315425
Target:  5'- gGAgCUGCGGGugGCgCGGCUGcuGCGCGg -3'
miRNA:   3'- -CUgGGCGCCCugUGgGUCGGC--CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 136937 0.67 0.553683
Target:  5'- uGACCgCGCGGca-GCCCAucccccuGUCGGCGCu -3'
miRNA:   3'- -CUGG-GCGCCcugUGGGU-------CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 135644 0.75 0.186683
Target:  5'- cGAUCgGCGGGGgGCCCAGCguCGGCgGCGu -3'
miRNA:   3'- -CUGGgCGCCCUgUGGGUCG--GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 135444 0.69 0.433219
Target:  5'- cGCCCGCGGGAaccgucggucCGCCCcccGUCGaCGCGg -3'
miRNA:   3'- cUGGGCGCCCU----------GUGGGu--CGGCcGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.