miRNA display CGI


Results 81 - 100 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 135384 0.7 0.377077
Target:  5'- cGCCCGCGGG-CGCCaaaccgugccgaGGCgGGCGgGa -3'
miRNA:   3'- cUGGGCGCCCuGUGGg-----------UCGgCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 133189 0.66 0.582079
Target:  5'- cGGCCuCGgcgauCGGGACgACCgCGGUCGGgGCGc -3'
miRNA:   3'- -CUGG-GC-----GCCCUG-UGG-GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 132686 0.66 0.609831
Target:  5'- cGAUCgGCuc-GCGCCCGGCUGGCGgGa -3'
miRNA:   3'- -CUGGgCGcccUGUGGGUCGGCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 131298 0.69 0.441395
Target:  5'- cGACCUGUac-ACGCCCugcucgagcagcGGCCGGCGCGa -3'
miRNA:   3'- -CUGGGCGcccUGUGGG------------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 131088 0.68 0.474944
Target:  5'- cGGCUCGCGcgggcuccGGACGgCgGGgCGGCGCGg -3'
miRNA:   3'- -CUGGGCGC--------CCUGUgGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 130842 0.66 0.62841
Target:  5'- gGACCgGCaGGcCGCCCuacuGCaGGCGCa -3'
miRNA:   3'- -CUGGgCGcCCuGUGGGu---CGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129695 0.71 0.349487
Target:  5'- cGACggGCGaGGACGCCCGcuucuGCCGGcCGCGg -3'
miRNA:   3'- -CUGggCGC-CCUGUGGGU-----CGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 129621 0.67 0.536482
Target:  5'- cGAgUCGCcGGcCGCCCGGCgGGUGCu -3'
miRNA:   3'- -CUgGGCGcCCuGUGGGUCGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129603 0.67 0.536481
Target:  5'- uGACCCGUGu--CGCCCAcuuuCCGGCGCc -3'
miRNA:   3'- -CUGGGCGCccuGUGGGUc---GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129497 0.68 0.501796
Target:  5'- uGGCgaGCGGGACACgucucuccucucuuaCAGuCCGGCGCu -3'
miRNA:   3'- -CUGggCGCCCUGUGg--------------GUC-GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129102 0.66 0.60056
Target:  5'- --gCUGUGGGugG-CguGCCGGCGCa -3'
miRNA:   3'- cugGGCGCCCugUgGguCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129054 0.68 0.466434
Target:  5'- -gUCCaCGaGGGCGCCCuugAGCUGGCGCa -3'
miRNA:   3'- cuGGGcGC-CCUGUGGG---UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 128400 0.68 0.463897
Target:  5'- cGCCUgaGCGGGcgucgguccgaaagGCGgCCGGUCGGCGCa -3'
miRNA:   3'- cUGGG--CGCCC--------------UGUgGGUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 127910 0.69 0.449657
Target:  5'- uGCCCGUgacGGGGCccuCCCAGgCGGCGa- -3'
miRNA:   3'- cUGGGCG---CCCUGu--GGGUCgGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 127295 0.67 0.563717
Target:  5'- cGGCgCGaGGGAU-CCCAGCCGcuGCGCa -3'
miRNA:   3'- -CUGgGCgCCCUGuGGGUCGGC--CGCGc -5'
14576 3' -65.6 NC_003521.1 + 123338 0.66 0.637706
Target:  5'- -cCCCGCcGGACagGCCCGucGCCgGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCUG--UGGGU--CGG-CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 121888 0.68 0.483529
Target:  5'- uGGCCCuGaCGGGACgccgccGCCCAcGCCgcGGCGCc -3'
miRNA:   3'- -CUGGG-C-GCCCUG------UGGGU-CGG--CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 120932 0.68 0.509718
Target:  5'- uGCCCGCGGcGGCGgcUCCGGCgaGGgGCa -3'
miRNA:   3'- cUGGGCGCC-CUGU--GGGUCGg-CCgCGc -5'
14576 3' -65.6 NC_003521.1 + 120528 0.68 0.509717
Target:  5'- cGCCCG-GGGAaggGCCCucggcGGCCGGCGg- -3'
miRNA:   3'- cUGGGCgCCCUg--UGGG-----UCGGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 117324 0.68 0.49132
Target:  5'- cGGCa-GCGGcgacgacGACACCCcGCCGGCGaCGg -3'
miRNA:   3'- -CUGggCGCC-------CUGUGGGuCGGCCGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.