miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 65717 0.71 0.356606
Target:  5'- cGGCgCCGCGGcGGC-CCUGGCCGGCa-- -3'
miRNA:   3'- -CUG-GGCGCC-CUGuGGGUCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 129695 0.71 0.349487
Target:  5'- cGACggGCGaGGACGCCCGcuucuGCCGGcCGCGg -3'
miRNA:   3'- -CUGggCGC-CCUGUGGGU-----CGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 213713 0.74 0.223477
Target:  5'- gGGCCuCG-GGGAUGCCCAGCCagacGGCGCc -3'
miRNA:   3'- -CUGG-GCgCCCUGUGGGUCGG----CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 68420 0.74 0.223477
Target:  5'- -uCCCGCGGcGACgGCUCcGCCGGCGCc -3'
miRNA:   3'- cuGGGCGCC-CUG-UGGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 24162 0.74 0.223477
Target:  5'- uACUCGCGGGGCACUCggaaaggagcgaAGCCGG-GCGg -3'
miRNA:   3'- cUGGGCGCCCUGUGGG------------UCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 85334 0.75 0.204363
Target:  5'- uGGCCCGCGGccCGCCgcaGGCCGGCGUc -3'
miRNA:   3'- -CUGGGCGCCcuGUGGg--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 164822 0.76 0.174321
Target:  5'- cGCCCGCGGGGgaggaggaACCggCGGCCGGCGCc -3'
miRNA:   3'- cUGGGCGCCCUg-------UGG--GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 64743 0.76 0.162693
Target:  5'- gGACgCCGUGGccaaGACGCC-GGCCGGCGCGg -3'
miRNA:   3'- -CUG-GGCGCC----CUGUGGgUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 70095 0.79 0.099177
Target:  5'- --gCCGCaGGGCACCUGGCCGGCGUGc -3'
miRNA:   3'- cugGGCGcCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 60690 0.79 0.096826
Target:  5'- cGGCCgCGCGGGGgACCCGGgggCGGCGCGg -3'
miRNA:   3'- -CUGG-GCGCCCUgUGGGUCg--GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 62222 0.74 0.228487
Target:  5'- gGACgCCGUGcugcaggaGGGCGCCCGGCUGGaCGCGc -3'
miRNA:   3'- -CUG-GGCGC--------CCUGUGGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 91767 0.73 0.247854
Target:  5'- -cCCCGCGGGucccgcauccccccACACCCGGgCGGCGg- -3'
miRNA:   3'- cuGGGCGCCC--------------UGUGGGUCgGCCGCgc -5'
14576 3' -65.6 NC_003521.1 + 204307 0.71 0.335554
Target:  5'- cGACCgGCGGGugACCgCAGuCCGaCGCc -3'
miRNA:   3'- -CUGGgCGCCCugUGG-GUC-GGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 239469 0.71 0.324704
Target:  5'- uGGCCCGCGGcGCGuucagcCCCAGCCGGUuggaccgauacagccGCGc -3'
miRNA:   3'- -CUGGGCGCCcUGU------GGGUCGGCCG---------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 24406 0.71 0.322032
Target:  5'- gGGCCCGCGGaGCAUagaaagCCAGaCGGCGCa -3'
miRNA:   3'- -CUGGGCGCCcUGUG------GGUCgGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 137296 0.71 0.315425
Target:  5'- gGAgCUGCGGGugGCgCGGCUGcuGCGCGg -3'
miRNA:   3'- -CUgGGCGCCCugUGgGUCGGC--CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 115813 0.71 0.31477
Target:  5'- cGCCgcucaggCGCGGGugGCUCAGCaGGCGCu -3'
miRNA:   3'- cUGG-------GCGCCCugUGGGUCGgCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 10497 0.72 0.30252
Target:  5'- cGCCgGCGGGGauggcguggcCcCCCAGgCGGCGCGa -3'
miRNA:   3'- cUGGgCGCCCU----------GuGGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 152343 0.73 0.249483
Target:  5'- gGGCCCGCGccGACGCugcucuggggCCGGCCGGgGCGg -3'
miRNA:   3'- -CUGGGCGCc-CUGUG----------GGUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 66616 0.73 0.249483
Target:  5'- cGACCCGCGcGAC-CCCAacGUgGGCGCGu -3'
miRNA:   3'- -CUGGGCGCcCUGuGGGU--CGgCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.