Results 61 - 80 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14576 | 3' | -65.6 | NC_003521.1 | + | 129695 | 0.71 | 0.349487 |
Target: 5'- cGACggGCGaGGACGCCCGcuucuGCCGGcCGCGg -3' miRNA: 3'- -CUGggCGC-CCUGUGGGU-----CGGCC-GCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 65717 | 0.71 | 0.356606 |
Target: 5'- cGGCgCCGCGGcGGC-CCUGGCCGGCa-- -3' miRNA: 3'- -CUG-GGCGCC-CUGuGGGUCGGCCGcgc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 240122 | 0.69 | 0.417135 |
Target: 5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGg -3' miRNA: 3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 238488 | 0.69 | 0.417135 |
Target: 5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGa -3' miRNA: 3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 44166 | 0.69 | 0.425132 |
Target: 5'- gGACCUGC---GCACCCAGCUGGaCGUGc -3' miRNA: 3'- -CUGGGCGcccUGUGGGUCGGCC-GCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 201594 | 0.69 | 0.425132 |
Target: 5'- cGCCCGCGGGcCACCgCuguccccgAGCCcGCGCu -3' miRNA: 3'- cUGGGCGCCCuGUGG-G--------UCGGcCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 186540 | 0.69 | 0.425132 |
Target: 5'- gGGCuCCGUGGGAgGCagGGCCGGCaCGa -3' miRNA: 3'- -CUG-GGCGCCCUgUGggUCGGCCGcGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 135444 | 0.69 | 0.433219 |
Target: 5'- cGCCCGCGGGAaccgucggucCGCCCcccGUCGaCGCGg -3' miRNA: 3'- cUGGGCGCCCU----------GUGGGu--CGGCcGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 91954 | 0.69 | 0.448828 |
Target: 5'- gGACCCcguggcgGCGaGGGCggaACCCGGCggccgaucCGGCGCGa -3' miRNA: 3'- -CUGGG-------CGC-CCUG---UGGGUCG--------GCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 42541 | 0.69 | 0.449658 |
Target: 5'- -cCCCaGCGGuccuccgcGACGCCCGGCUGGCuguccgGCGg -3' miRNA: 3'- cuGGG-CGCC--------CUGUGGGUCGGCCG------CGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 59936 | 0.69 | 0.417135 |
Target: 5'- -cUCCGaCGuGGACGCCgaucaaCAGcCCGGCGCGg -3' miRNA: 3'- cuGGGC-GC-CCUGUGG------GUC-GGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 92471 | 0.69 | 0.417135 |
Target: 5'- uGCCCGCucgGGGGuCuCCCAGCCucuccgGGCGUGg -3' miRNA: 3'- cUGGGCG---CCCU-GuGGGUCGG------CCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 165958 | 0.7 | 0.376332 |
Target: 5'- cGugUCGUgcucGGGcaggcugaggaagcGCACCCAGUCGGCGCu -3' miRNA: 3'- -CugGGCG----CCC--------------UGUGGGUCGGCCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 135384 | 0.7 | 0.377077 |
Target: 5'- cGCCCGCGGG-CGCCaaaccgugccgaGGCgGGCGgGa -3' miRNA: 3'- cUGGGCGCCCuGUGGg-----------UCGgCCGCgC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 240028 | 0.7 | 0.377822 |
Target: 5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3' miRNA: 3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 36228 | 0.7 | 0.393706 |
Target: 5'- gGACCCcgaGCaGGACuACCgAcuGCCGGCGCGc -3' miRNA: 3'- -CUGGG---CGcCCUG-UGGgU--CGGCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 142288 | 0.7 | 0.400645 |
Target: 5'- gGACCCGcCGccGCugcagcgGCCCAGCCGcGCGCGu -3' miRNA: 3'- -CUGGGC-GCccUG-------UGGGUCGGC-CGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 196880 | 0.69 | 0.409231 |
Target: 5'- cGGCaCCGCGGGugA---GGCCGGgGCGg -3' miRNA: 3'- -CUG-GGCGCCCugUgggUCGGCCgCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 32079 | 0.69 | 0.41634 |
Target: 5'- uGGCCCGUGGccACGgCCAGCgccaugcguuuggCGGCGCGg -3' miRNA: 3'- -CUGGGCGCCc-UGUgGGUCG-------------GCCGCGC- -5' |
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14576 | 3' | -65.6 | NC_003521.1 | + | 109992 | 0.69 | 0.41634 |
Target: 5'- cGGCCUgccgguccagcagGCGGGagauguGCACCCGGCUcucgugGGCGCGc -3' miRNA: 3'- -CUGGG-------------CGCCC------UGUGGGUCGG------CCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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