miRNA display CGI


Results 81 - 100 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 131088 0.68 0.474944
Target:  5'- cGGCUCGCGcgggcuccGGACGgCgGGgCGGCGCGg -3'
miRNA:   3'- -CUGGGCGC--------CCUGUgGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 226889 0.68 0.474944
Target:  5'- --gCUGCgGGGGCACCacggCGGCCaGCGCGg -3'
miRNA:   3'- cugGGCG-CCCUGUGG----GUCGGcCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 135444 0.69 0.433219
Target:  5'- cGCCCGCGGGAaccgucggucCGCCCcccGUCGaCGCGg -3'
miRNA:   3'- cUGGGCGCCCU----------GUGGGu--CGGCcGCGC- -5'
14576 3' -65.6 NC_003521.1 + 186540 0.69 0.425132
Target:  5'- gGGCuCCGUGGGAgGCagGGCCGGCaCGa -3'
miRNA:   3'- -CUG-GGCGCCCUgUGggUCGGCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 142288 0.7 0.400645
Target:  5'- gGACCCGcCGccGCugcagcgGCCCAGCCGcGCGCGu -3'
miRNA:   3'- -CUGGGC-GCccUG-------UGGGUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 196880 0.69 0.409231
Target:  5'- cGGCaCCGCGGGugA---GGCCGGgGCGg -3'
miRNA:   3'- -CUG-GGCGCCCugUgggUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 32079 0.69 0.41634
Target:  5'- uGGCCCGUGGccACGgCCAGCgccaugcguuuggCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCc-UGUgGGUCG-------------GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 109992 0.69 0.41634
Target:  5'- cGGCCUgccgguccagcagGCGGGagauguGCACCCGGCUcucgugGGCGCGc -3'
miRNA:   3'- -CUGGG-------------CGCCC------UGUGGGUCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92471 0.69 0.417135
Target:  5'- uGCCCGCucgGGGGuCuCCCAGCCucuccgGGCGUGg -3'
miRNA:   3'- cUGGGCG---CCCU-GuGGGUCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 59936 0.69 0.417135
Target:  5'- -cUCCGaCGuGGACGCCgaucaaCAGcCCGGCGCGg -3'
miRNA:   3'- cuGGGC-GC-CCUGUGG------GUC-GGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 240122 0.69 0.417135
Target:  5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGg -3'
miRNA:   3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 238488 0.69 0.417135
Target:  5'- cGGCCCa-GGGucagcaGCCCcaggaGGCCGGCGCGa -3'
miRNA:   3'- -CUGGGcgCCCug----UGGG-----UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 44166 0.69 0.425132
Target:  5'- gGACCUGC---GCACCCAGCUGGaCGUGc -3'
miRNA:   3'- -CUGGGCGcccUGUGGGUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 201594 0.69 0.425132
Target:  5'- cGCCCGCGGGcCACCgCuguccccgAGCCcGCGCu -3'
miRNA:   3'- cUGGGCGCCCuGUGG-G--------UCGGcCGCGc -5'
14576 3' -65.6 NC_003521.1 + 162905 0.76 0.170364
Target:  5'- uGCCUGCaGGACGCCCuGuuGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCUGUGGGuCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 102975 0.76 0.166489
Target:  5'- gGGCUCugGCGGGGCgGCCCAGCCgcGGCGUGa -3'
miRNA:   3'- -CUGGG--CGCCCUG-UGGGUCGG--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 195685 0.76 0.155333
Target:  5'- aGAUCUGCGGGAUGUCCuGCCGGUGCa -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 173256 0.77 0.138238
Target:  5'- uGGCCCGCGGGGCccGCCgccugacaCAGuuGGCGCa -3'
miRNA:   3'- -CUGGGCGCCCUG--UGG--------GUCggCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 92355 0.78 0.128221
Target:  5'- cGACCCGCGGGcuuuucgucaucagcACGCaCCGgccaccccuggagccGCCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCC---------------UGUG-GGU---------------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 123338 0.66 0.637706
Target:  5'- -cCCCGCcGGACagGCCCGucGCCgGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCUG--UGGGU--CGG-CCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.