miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 1958 1.06 0.001162
Target:  5'- gGACCCGCGGGACACCCAGCCGGCGCGc -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 198266 0.71 0.335554
Target:  5'- --gCCGCcGGACAgCCAGCCGGgcguCGCGg -3'
miRNA:   3'- cugGGCGcCCUGUgGGUCGGCC----GCGC- -5'
14576 3' -65.6 NC_003521.1 + 155325 0.71 0.356606
Target:  5'- aGACgaCCGCGGGu--CCCGGCgggGGCGCGg -3'
miRNA:   3'- -CUG--GGCGCCCuguGGGUCGg--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 123338 0.66 0.637706
Target:  5'- -cCCCGCcGGACagGCCCGucGCCgGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCUG--UGGGU--CGG-CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 102975 0.76 0.166489
Target:  5'- gGGCUCugGCGGGGCgGCCCAGCCgcGGCGUGa -3'
miRNA:   3'- -CUGGG--CGCCCUG-UGGGUCGG--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 162905 0.76 0.170364
Target:  5'- uGCCUGCaGGACGCCCuGuuGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCUGUGGGuCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 135644 0.75 0.186683
Target:  5'- cGAUCgGCGGGGgGCCCAGCguCGGCgGCGu -3'
miRNA:   3'- -CUGGgCGCCCUgUGGGUCG--GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 178790 0.75 0.190972
Target:  5'- -gUCCGCGGGACgggcgaggcauGCCCGGCgGGCGgGu -3'
miRNA:   3'- cuGGGCGCCCUG-----------UGGGUCGgCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 101908 0.73 0.254975
Target:  5'- --gCCGUGGuccGACACCgAGCCGGCGUa -3'
miRNA:   3'- cugGGCGCC---CUGUGGgUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 39241 0.71 0.324703
Target:  5'- uGGCCCGCGGcGCGuucagcCCCAGCCGGUuggaccgauacagccGCGc -3'
miRNA:   3'- -CUGGGCGCCcUGU------GGGUCGGCCG---------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 113845 0.72 0.296221
Target:  5'- cGGCa-GCGGGGCGgCCGGCgacgaCGGCGCGg -3'
miRNA:   3'- -CUGggCGCCCUGUgGGUCG-----GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 230321 0.73 0.249483
Target:  5'- cGCCUGgGGGGCcacgccauCCCcGCCGGCGCa -3'
miRNA:   3'- cUGGGCgCCCUGu-------GGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 92355 0.78 0.128221
Target:  5'- cGACCCGCGGGcuuuucgucaucagcACGCaCCGgccaccccuggagccGCCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCC---------------UGUG-GGU---------------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 95164 0.72 0.302519
Target:  5'- aACUCGCGGGccgaggGCACCuCGcGCuCGGCGCGg -3'
miRNA:   3'- cUGGGCGCCC------UGUGG-GU-CG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 173256 0.77 0.138238
Target:  5'- uGGCCCGCGGGGCccGCCgccugacaCAGuuGGCGCa -3'
miRNA:   3'- -CUGGGCGCCCUG--UGG--------GUCggCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 196963 0.75 0.203904
Target:  5'- cGGCCCGggagccggcCGGGGCGCCUgugacgggcccgcGGCCGGCgGCGg -3'
miRNA:   3'- -CUGGGC---------GCCCUGUGGG-------------UCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 15213 0.72 0.302519
Target:  5'- cGACaUCGUGGGGCugCaggCGGCCGaGCGCGa -3'
miRNA:   3'- -CUG-GGCGCCCUGugG---GUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 61312 0.71 0.342469
Target:  5'- cGCCCGUGGGACuACUgGGacacguguuccCCGGCGCu -3'
miRNA:   3'- cUGGGCGCCCUG-UGGgUC-----------GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 195685 0.76 0.155333
Target:  5'- aGAUCUGCGGGAUGUCCuGCCGGUGCa -3'
miRNA:   3'- -CUGGGCGCCCUGUGGGuCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 44056 0.76 0.174321
Target:  5'- cGCCCGCGGu-CGCgCCGGCCGGgGCa -3'
miRNA:   3'- cUGGGCGCCcuGUG-GGUCGGCCgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.