miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 170715 0.69 0.441395
Target:  5'- cGGCCCuuCGGcGGCACgCCGGCCaGGUGCc -3'
miRNA:   3'- -CUGGGc-GCC-CUGUG-GGUCGG-CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 198266 0.71 0.335554
Target:  5'- --gCCGCcGGACAgCCAGCCGGgcguCGCGg -3'
miRNA:   3'- cugGGCGcCCUGUgGGUCGGCC----GCGC- -5'
14576 3' -65.6 NC_003521.1 + 173256 0.77 0.138238
Target:  5'- uGGCCCGCGGGGCccGCCgccugacaCAGuuGGCGCa -3'
miRNA:   3'- -CUGGGCGCCCUG--UGG--------GUCggCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 90546 0.69 0.441395
Target:  5'- -cCCCGCGacaGCACCCacgagaGGCCGGcCGCGg -3'
miRNA:   3'- cuGGGCGCcc-UGUGGG------UCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 92355 0.78 0.128221
Target:  5'- cGACCCGCGGGcuuuucgucaucagcACGCaCCGgccaccccuggagccGCCGGCGCGg -3'
miRNA:   3'- -CUGGGCGCCC---------------UGUG-GGU---------------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 129497 0.68 0.501796
Target:  5'- uGGCgaGCGGGACACgucucuccucucuuaCAGuCCGGCGCu -3'
miRNA:   3'- -CUGggCGCCCUGUGg--------------GUC-GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 102975 0.76 0.166489
Target:  5'- gGGCUCugGCGGGGCgGCCCAGCCgcGGCGUGa -3'
miRNA:   3'- -CUGGG--CGCCCUG-UGGGUCGG--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103335 0.68 0.500919
Target:  5'- aGACCuCGCGGcGcCGCgaCAcGCCGGCGCc -3'
miRNA:   3'- -CUGG-GCGCC-CuGUGg-GU-CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 117324 0.68 0.49132
Target:  5'- cGGCa-GCGGcgacgacGACACCCcGCCGGCGaCGg -3'
miRNA:   3'- -CUGggCGCC-------CUGUGGGuCGGCCGC-GC- -5'
14576 3' -65.6 NC_003521.1 + 222046 0.68 0.474943
Target:  5'- uAUCgGCGGGGgGCaCCAGCCGuCGCa -3'
miRNA:   3'- cUGGgCGCCCUgUG-GGUCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 88026 0.68 0.466434
Target:  5'- cACCUGCcGGugACCgAGgCGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCugUGGgUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 1854 0.69 0.455492
Target:  5'- aGACCgGgaCGGGGCccggcgccucuaauACCgCAGCUGGCGCa -3'
miRNA:   3'- -CUGGgC--GCCCUG--------------UGG-GUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 116632 0.69 0.449657
Target:  5'- gGGCCCGCuc-ACcCCCAGCCGGCagGCGc -3'
miRNA:   3'- -CUGGGCGcccUGuGGGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 39895 0.69 0.433218
Target:  5'- gGGCgUGCGGu-CGuCCCGGCgGGCGCGa -3'
miRNA:   3'- -CUGgGCGCCcuGU-GGGUCGgCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 92236 0.7 0.401421
Target:  5'- gGGCCCGaCGGG-CGCCgcgcggucuuuUGGCCGGuCGCGu -3'
miRNA:   3'- -CUGGGC-GCCCuGUGG-----------GUCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 39801 0.7 0.377822
Target:  5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3'
miRNA:   3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 155325 0.71 0.356606
Target:  5'- aGACgaCCGCGGGu--CCCGGCgggGGCGCGg -3'
miRNA:   3'- -CUG--GGCGCCCuguGGGUCGg--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 95164 0.72 0.302519
Target:  5'- aACUCGCGGGccgaggGCACCuCGcGCuCGGCGCGg -3'
miRNA:   3'- cUGGGCGCCC------UGUGG-GU-CG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 101908 0.73 0.254975
Target:  5'- --gCCGUGGuccGACACCgAGCCGGCGUa -3'
miRNA:   3'- cugGGCGCC---CUGUGGgUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 135644 0.75 0.186683
Target:  5'- cGAUCgGCGGGGgGCCCAGCguCGGCgGCGu -3'
miRNA:   3'- -CUGGgCGCCCUgUGGGUCG--GCCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.