miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 116632 0.69 0.449657
Target:  5'- gGGCCCGCuc-ACcCCCAGCCGGCagGCGc -3'
miRNA:   3'- -CUGGGCGcccUGuGGGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 28143 0.68 0.466434
Target:  5'- uACCUGCGGGAUacgcuGCCCGuCUGGgGCa -3'
miRNA:   3'- cUGGGCGCCCUG-----UGGGUcGGCCgCGc -5'
14576 3' -65.6 NC_003521.1 + 162905 0.76 0.170364
Target:  5'- uGCCUGCaGGACGCCCuGuuGGUGCGc -3'
miRNA:   3'- cUGGGCGcCCUGUGGGuCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 178790 0.75 0.190972
Target:  5'- -gUCCGCGGGACgggcgaggcauGCCCGGCgGGCGgGu -3'
miRNA:   3'- cuGGGCGCCCUG-----------UGGGUCGgCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 105453 0.73 0.266256
Target:  5'- cGCCCGCGGGcgauaacCGCCgCGGagaCGGCGCGc -3'
miRNA:   3'- cUGGGCGCCCu------GUGG-GUCg--GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 15213 0.72 0.302519
Target:  5'- cGACaUCGUGGGGCugCaggCGGCCGaGCGCGa -3'
miRNA:   3'- -CUG-GGCGCCCUGugG---GUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 103574 0.71 0.356606
Target:  5'- uGCCCGCuGccgccgucGGC-CCCGGCCGGUGCGc -3'
miRNA:   3'- cUGGGCGcC--------CUGuGGGUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 8628 0.7 0.378568
Target:  5'- cACCCGCGGGG-GCCCA--UGGCGUGg -3'
miRNA:   3'- cUGGGCGCCCUgUGGGUcgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 18071 0.69 0.40923
Target:  5'- cGACgCCGUGGccguaGCCCAGaCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGCCcug--UGGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 106569 0.69 0.433218
Target:  5'- aACCUGCaccGGGuCACCCuGGCCgagggcGGCGCGg -3'
miRNA:   3'- cUGGGCG---CCCuGUGGG-UCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36304 0.67 0.563717
Target:  5'- aGGCCgGgUGGGGCGCacccuCAGUCGGgGCGu -3'
miRNA:   3'- -CUGGgC-GCCCUGUGg----GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 102774 0.67 0.554593
Target:  5'- cGGCggUCGCGGGcgacccACGCCCcgugcGCCGGCaGCGa -3'
miRNA:   3'- -CUG--GGCGCCC------UGUGGGu----CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 174073 0.68 0.466434
Target:  5'- cACCCGCGGGAUGucgUCCAGUcgCGGCaCGa -3'
miRNA:   3'- cUGGGCGCCCUGU---GGGUCG--GCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 121888 0.68 0.483529
Target:  5'- uGGCCCuGaCGGGACgccgccGCCCAcGCCgcGGCGCc -3'
miRNA:   3'- -CUGGG-C-GCCCUG------UGGGU-CGG--CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 103335 0.68 0.500919
Target:  5'- aGACCuCGCGGcGcCGCgaCAcGCCGGCGCc -3'
miRNA:   3'- -CUGG-GCGCC-CuGUGg-GU-CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 129497 0.68 0.501796
Target:  5'- uGGCgaGCGGGACACgucucuccucucuuaCAGuCCGGCGCu -3'
miRNA:   3'- -CUGggCGCCCUGUGg--------------GUC-GGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 91178 0.68 0.509717
Target:  5'- aGCCCGCaccaGGaGAgCACCUcGCCGGCgGCGu -3'
miRNA:   3'- cUGGGCG----CC-CU-GUGGGuCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 13972 0.67 0.527502
Target:  5'- aGCCCuGauGGGCcuGCCCGGCgCGGCgGCGg -3'
miRNA:   3'- cUGGG-CgcCCUG--UGGGUCG-GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 5310 0.67 0.545513
Target:  5'- -uUUCGCGGGGgcggcgUGCCCcGCCGGcCGCGa -3'
miRNA:   3'- cuGGGCGCCCU------GUGGGuCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 187192 0.67 0.545513
Target:  5'- cGGCCCGCcugcaucgGGGACAUUC-GUCGGCGg- -3'
miRNA:   3'- -CUGGGCG--------CCCUGUGGGuCGGCCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.