miRNA display CGI


Results 81 - 100 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 103335 0.68 0.500919
Target:  5'- aGACCuCGCGGcGcCGCgaCAcGCCGGCGCc -3'
miRNA:   3'- -CUGG-GCGCC-CuGUGg-GU-CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 2431 0.68 0.509717
Target:  5'- -cCCCGCuGGGACGCCCuGCaCGuucauccccGCGCc -3'
miRNA:   3'- cuGGGCG-CCCUGUGGGuCG-GC---------CGCGc -5'
14576 3' -65.6 NC_003521.1 + 111203 0.67 0.517691
Target:  5'- cACCCGCcGGGCggccggcgacucgACUauuagagcgucgCGGCCGGCGCGg -3'
miRNA:   3'- cUGGGCGcCCUG-------------UGG------------GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 150911 0.67 0.527502
Target:  5'- cGCCUG-GGGAUcgaACCuCGGCuCGGUGCGg -3'
miRNA:   3'- cUGGGCgCCCUG---UGG-GUCG-GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 5310 0.67 0.545513
Target:  5'- -uUUCGCGGGGgcggcgUGCCCcGCCGGcCGCGa -3'
miRNA:   3'- cuGGGCGCCCU------GUGGGuCGGCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 16203 0.67 0.554593
Target:  5'- uGGCCCuucgagGUGGcGGCGCCCugccgccuGGCCGaGUGCGa -3'
miRNA:   3'- -CUGGG------CGCC-CUGUGGG--------UCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 102774 0.67 0.554593
Target:  5'- cGGCggUCGCGGGcgacccACGCCCcgugcGCCGGCaGCGa -3'
miRNA:   3'- -CUG--GGCGCCC------UGUGGGu----CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 166240 0.69 0.449657
Target:  5'- --gCCGCGGGACGCCgC-GCCGcCGCu -3'
miRNA:   3'- cugGGCGCCCUGUGG-GuCGGCcGCGc -5'
14576 3' -65.6 NC_003521.1 + 201379 0.69 0.441395
Target:  5'- cGGCCCuCGGcGCcggGCUCGGCCGGCaGCGg -3'
miRNA:   3'- -CUGGGcGCCcUG---UGGGUCGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 106569 0.69 0.433218
Target:  5'- aACCUGCaccGGGuCACCCuGGCCgagggcGGCGCGg -3'
miRNA:   3'- cUGGGCG---CCCuGUGGG-UCGG------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 161969 0.66 0.582079
Target:  5'- cGACCgGCGGaucacCACCUucGGCUGGUGCu -3'
miRNA:   3'- -CUGGgCGCCcu---GUGGG--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 17419 0.66 0.591307
Target:  5'- cGCCgCGcCGGGGCGCCacaCGGCCcgcgucggGGCGCc -3'
miRNA:   3'- cUGG-GC-GCCCUGUGG---GUCGG--------CCGCGc -5'
14576 3' -65.6 NC_003521.1 + 95506 0.66 0.596856
Target:  5'- aGGCCCucGUGcuucaggccgaacuGGAUGCCCGgcgagacGCCGGCGCGc -3'
miRNA:   3'- -CUGGG--CGC--------------CCUGUGGGU-------CGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 210595 0.66 0.60056
Target:  5'- gGACCUGCaGcGcGACGCCaaCGGCCGGC-CGa -3'
miRNA:   3'- -CUGGGCG-C-C-CUGUGG--GUCGGCCGcGC- -5'
14576 3' -65.6 NC_003521.1 + 104903 0.66 0.609831
Target:  5'- -uCCCGCGGccGugGCCgaGGCCGGCa-- -3'
miRNA:   3'- cuGGGCGCC--CugUGGg-UCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 105453 0.73 0.266256
Target:  5'- cGCCCGCGGGcgauaacCGCCgCGGagaCGGCGCGc -3'
miRNA:   3'- cUGGGCGCCCu------GUGG-GUCg--GCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 15213 0.72 0.302519
Target:  5'- cGACaUCGUGGGGCugCaggCGGCCGaGCGCGa -3'
miRNA:   3'- -CUG-GGCGCCCUGugG---GUCGGC-CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 155325 0.71 0.356606
Target:  5'- aGACgaCCGCGGGu--CCCGGCgggGGCGCGg -3'
miRNA:   3'- -CUG--GGCGCCCuguGGGUCGg--CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 39801 0.7 0.377822
Target:  5'- aGGCUCgGCGGGGCGCCgGGCgguccuccgccgaUGGCGCc -3'
miRNA:   3'- -CUGGG-CGCCCUGUGGgUCG-------------GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 18071 0.69 0.40923
Target:  5'- cGACgCCGUGGccguaGCCCAGaCGGCGCGc -3'
miRNA:   3'- -CUG-GGCGCCcug--UGGGUCgGCCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.