miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 150705 0.66 0.946754
Target:  5'- uGCGCcgGCGGCGAcugGCucucgGCCguGGGcCa -3'
miRNA:   3'- uUGCGuaUGCCGCU---UG-----UGGguCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 100602 0.66 0.932975
Target:  5'- gGACGag-GCGGCGaAGCgucucuugGCCgGGGGACc -3'
miRNA:   3'- -UUGCguaUGCCGC-UUG--------UGGgUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 72991 0.66 0.932975
Target:  5'- --aGCccGCGGCGGucgUGCCCGGGGGg -3'
miRNA:   3'- uugCGuaUGCCGCUu--GUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 237077 0.66 0.935894
Target:  5'- --aGCAUGCGGCGGucuagugagaCCAcGGGACu -3'
miRNA:   3'- uugCGUAUGCCGCUugug------GGU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 177192 0.66 0.927926
Target:  5'- uGCGCGUGCGGU--ACuucUCCAGGcGGCg -3'
miRNA:   3'- uUGCGUAUGCCGcuUGu--GGGUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 74106 0.66 0.950896
Target:  5'- uGCGCG-ACuGCGcGACGCCCAuGGGCg -3'
miRNA:   3'- uUGCGUaUGcCGC-UUGUGGGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 62222 0.66 0.946754
Target:  5'- gGACGcCGUGCuGCaggaGGGCGCCCGGcuGGACg -3'
miRNA:   3'- -UUGC-GUAUGcCG----CUUGUGGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 105410 0.66 0.950896
Target:  5'- cGCGCGUgACGGCGAugGggauGGGGCa -3'
miRNA:   3'- uUGCGUA-UGCCGCUugUggguCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 163463 0.66 0.950896
Target:  5'- gAGCGCAUGacugaGGaUGAugAgaCCGGGGGCg -3'
miRNA:   3'- -UUGCGUAUg----CC-GCUugUg-GGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 224263 0.66 0.932975
Target:  5'- aAAUGCAgGCGcGCGcccuCACCCAGGuGCa -3'
miRNA:   3'- -UUGCGUaUGC-CGCuu--GUGGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 57587 0.66 0.932975
Target:  5'- gGGCGCcgGCGGCGAAC-CCCGa---- -3'
miRNA:   3'- -UUGCGuaUGCCGCUUGuGGGUcccug -5'
14576 5' -56.3 NC_003521.1 + 103067 0.66 0.927926
Target:  5'- gGGCGgGUGCgcgGGCGAgggcuGCugCUGGGGAUg -3'
miRNA:   3'- -UUGCgUAUG---CCGCU-----UGugGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 112056 0.66 0.950896
Target:  5'- cGACGCcUGCuGGaGGACGCCgcgguggggauCAGGGGCg -3'
miRNA:   3'- -UUGCGuAUG-CCgCUUGUGG-----------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 135359 0.66 0.937795
Target:  5'- cGCGCGccgucuccGCGGCGGuuauCGCCCGcGGGCg -3'
miRNA:   3'- uUGCGUa-------UGCCGCUu---GUGGGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 146518 0.66 0.950492
Target:  5'- -cCGCAgaaACGGCGGcucCACCCGGGucccuccGGCg -3'
miRNA:   3'- uuGCGUa--UGCCGCUu--GUGGGUCC-------CUG- -5'
14576 5' -56.3 NC_003521.1 + 37378 0.66 0.950896
Target:  5'- cGACuGCGguguucgagGCGGCGGggGCGCCCGGGccuugugcGACg -3'
miRNA:   3'- -UUG-CGUa--------UGCCGCU--UGUGGGUCC--------CUG- -5'
14576 5' -56.3 NC_003521.1 + 62106 0.66 0.927926
Target:  5'- gAACGCuu-CGGCGccCGCgCGGGGAa -3'
miRNA:   3'- -UUGCGuauGCCGCuuGUGgGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 197460 0.66 0.937795
Target:  5'- cAGCGCAUGCucuGGCGGauguucACGCgCGGcGGGCc -3'
miRNA:   3'- -UUGCGUAUG---CCGCU------UGUGgGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 115949 0.66 0.942387
Target:  5'- gGGCGUcuugcggcucaGUACGGCGuuguccgaGACGCCCAGGu-- -3'
miRNA:   3'- -UUGCG-----------UAUGCCGC--------UUGUGGGUCCcug -5'
14576 5' -56.3 NC_003521.1 + 125710 0.66 0.932975
Target:  5'- aGACGC---CGGCGGuCACgaCGGGGGCg -3'
miRNA:   3'- -UUGCGuauGCCGCUuGUGg-GUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.