miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 100602 0.66 0.932975
Target:  5'- gGACGag-GCGGCGaAGCgucucuugGCCgGGGGACc -3'
miRNA:   3'- -UUGCguaUGCCGC-UUG--------UGGgUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 72991 0.66 0.932975
Target:  5'- --aGCccGCGGCGGucgUGCCCGGGGGg -3'
miRNA:   3'- uugCGuaUGCCGCUu--GUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 70359 0.66 0.937795
Target:  5'- cGCGCuaguCGGCGAcaugacugggGCGCgaGGGGACa -3'
miRNA:   3'- uUGCGuau-GCCGCU----------UGUGggUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 178792 0.66 0.937795
Target:  5'- -cCGCGggACgGGCGAggcAUGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUa-UG-CCGCU---UGUGGGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 37378 0.66 0.950896
Target:  5'- cGACuGCGguguucgagGCGGCGGggGCGCCCGGGccuugugcGACg -3'
miRNA:   3'- -UUG-CGUa--------UGCCGCU--UGUGGGUCC--------CUG- -5'
14576 5' -56.3 NC_003521.1 + 126732 0.66 0.937795
Target:  5'- cGGCGCGguCGGCGAcaugGCugCguuGGGGACg -3'
miRNA:   3'- -UUGCGUauGCCGCU----UGugGg--UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 125710 0.66 0.932975
Target:  5'- aGACGC---CGGCGGuCACgaCGGGGGCg -3'
miRNA:   3'- -UUGCGuauGCCGCUuGUGg-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 113770 0.66 0.932975
Target:  5'- aGGCGCGUcgacgACGGCG-ACGgCCAGcGcGACg -3'
miRNA:   3'- -UUGCGUA-----UGCCGCuUGUgGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 130087 0.66 0.932975
Target:  5'- gGACGUGUACGcGCuGGucucCACCC-GGGACc -3'
miRNA:   3'- -UUGCGUAUGC-CG-CUu---GUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 74106 0.66 0.950896
Target:  5'- uGCGCG-ACuGCGcGACGCCCAuGGGCg -3'
miRNA:   3'- uUGCGUaUGcCGC-UUGUGGGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 57587 0.66 0.932975
Target:  5'- gGGCGCcgGCGGCGAAC-CCCGa---- -3'
miRNA:   3'- -UUGCGuaUGCCGCUUGuGGGUcccug -5'
14576 5' -56.3 NC_003521.1 + 103067 0.66 0.927926
Target:  5'- gGGCGgGUGCgcgGGCGAgggcuGCugCUGGGGAUg -3'
miRNA:   3'- -UUGCgUAUG---CCGCU-----UGugGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 120344 0.66 0.950896
Target:  5'- cGCGCcucuCGGCGGagACACCUGcGGACg -3'
miRNA:   3'- uUGCGuau-GCCGCU--UGUGGGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 149404 0.66 0.950896
Target:  5'- aGGCGCAUGCGcaCGGuCGCCCuGuGGGCc -3'
miRNA:   3'- -UUGCGUAUGCc-GCUuGUGGGuC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 150097 0.66 0.942387
Target:  5'- --aGCuAUGCGggaacagaGCGggUACCUAGGGAUc -3'
miRNA:   3'- uugCG-UAUGC--------CGCuuGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 139096 0.67 0.922648
Target:  5'- uACGUGUuCGGCGugaagGACGCCgAGGGGg -3'
miRNA:   3'- uUGCGUAuGCCGC-----UUGUGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 88653 0.67 0.911989
Target:  5'- aGGCGCAgagggccgccagguCGGUGGGCcggcggcccgGCUCGGGGACa -3'
miRNA:   3'- -UUGCGUau------------GCCGCUUG----------UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 133756 0.67 0.922648
Target:  5'- --gGCAggccCGGCGAu--UCCGGGGACg -3'
miRNA:   3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 164774 0.67 0.905443
Target:  5'- gAAC-CAUagugacGCGGCGGGCACgggucgUCGGGGACg -3'
miRNA:   3'- -UUGcGUA------UGCCGCUUGUG------GGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 234054 0.67 0.922107
Target:  5'- --gGCAUGguacuccUGGCcauGGACGCCCuGGGACu -3'
miRNA:   3'- uugCGUAU-------GCCG---CUUGUGGGuCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.