miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 41942 0.71 0.735814
Target:  5'- cACGCG-GCuGCGAcaguGCAUCCGGGGGCa -3'
miRNA:   3'- uUGCGUaUGcCGCU----UGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 183918 0.7 0.800258
Target:  5'- cGGCGCuGUAcCGGUGcAACA-CCAGGGACu -3'
miRNA:   3'- -UUGCG-UAU-GCCGC-UUGUgGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 117506 0.7 0.782449
Target:  5'- cGGgGCGUACGGCGGuauGCACuCCGuGGGCu -3'
miRNA:   3'- -UUgCGUAUGCCGCU---UGUG-GGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 200301 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 116883 0.7 0.773347
Target:  5'- uGGCGCGgcUGCGGCGGcGCGCCgGcGGGAg -3'
miRNA:   3'- -UUGCGU--AUGCCGCU-UGUGGgU-CCCUg -5'
14576 5' -56.3 NC_003521.1 + 11244 0.7 0.773347
Target:  5'- gAACGaugACGGCGAACgucgaGCCCGcguuGGGGCa -3'
miRNA:   3'- -UUGCguaUGCCGCUUG-----UGGGU----CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 15528 0.7 0.773347
Target:  5'- cGGCgGCAUGUGGCGAACGCgCuGGGAa -3'
miRNA:   3'- -UUG-CGUAUGCCGCUUGUGgGuCCCUg -5'
14576 5' -56.3 NC_003521.1 + 17773 0.7 0.764123
Target:  5'- -cCGCcgGCGGCGGACGgUCAGGuGAa -3'
miRNA:   3'- uuGCGuaUGCCGCUUGUgGGUCC-CUg -5'
14576 5' -56.3 NC_003521.1 + 240622 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 101165 0.7 0.791422
Target:  5'- -cUGCGUcccucuccucagACGGCGuccGCGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUA------------UGCCGCu--UGUGGGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 73 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 27514 0.7 0.782449
Target:  5'- gGGgGCGUGCGGCccgaGGCGCCCAcGGuGGCg -3'
miRNA:   3'- -UUgCGUAUGCCGc---UUGUGGGU-CC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 150472 0.69 0.842093
Target:  5'- ------gGCGGCGAGCGCCUgguGGGGCc -3'
miRNA:   3'- uugcguaUGCCGCUUGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 55086 0.69 0.834064
Target:  5'- cGGCGCAcccgcuCGGCGAucaccuccGCACCCGGcGaGACg -3'
miRNA:   3'- -UUGCGUau----GCCGCU--------UGUGGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 60684 0.69 0.834064
Target:  5'- -gUGC-UGCGGCcgcgcgGGGgACCCGGGGGCg -3'
miRNA:   3'- uuGCGuAUGCCG------CUUgUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 224740 0.69 0.825858
Target:  5'- cGACGCAgGCGGCcAGCGCgUcGGGGCu -3'
miRNA:   3'- -UUGCGUaUGCCGcUUGUGgGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 221909 0.69 0.825858
Target:  5'- cGGCGC--GCGGCGc-CACCCuucGGGGCu -3'
miRNA:   3'- -UUGCGuaUGCCGCuuGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 82765 0.69 0.84994
Target:  5'- cGCGCGacCGGCGGGCcguggaGCaCAGGGACg -3'
miRNA:   3'- uUGCGUauGCCGCUUG------UGgGUCCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.