miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 110688 0.69 0.834064
Target:  5'- gGugGCGgcaGCGGCG-GCGCCgccgacgacgCAGGGGCa -3'
miRNA:   3'- -UugCGUa--UGCCGCuUGUGG----------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 130747 0.69 0.808948
Target:  5'- gGACGUGU-CGGCGGGCGCgagcgccgcgCCGGGGGa -3'
miRNA:   3'- -UUGCGUAuGCCGCUUGUG----------GGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 55086 0.69 0.834064
Target:  5'- cGGCGCAcccgcuCGGCGAucaccuccGCACCCGGcGaGACg -3'
miRNA:   3'- -UUGCGUau----GCCGCU--------UGUGGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 60684 0.69 0.834064
Target:  5'- -gUGC-UGCGGCcgcgcgGGGgACCCGGGGGCg -3'
miRNA:   3'- uuGCGuAUGCCG------CUUgUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 221909 0.69 0.825858
Target:  5'- cGGCGC--GCGGCGc-CACCCuucGGGGCu -3'
miRNA:   3'- -UUGCGuaUGCCGCuuGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 25547 0.69 0.820853
Target:  5'- --aGCG-ACGGCGGACgcuguugugcaggcgGCCgCGGGGACa -3'
miRNA:   3'- uugCGUaUGCCGCUUG---------------UGG-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 102334 0.69 0.817483
Target:  5'- uGCGCGUG-GGCGccGACGCCgGGGuGGCg -3'
miRNA:   3'- uUGCGUAUgCCGC--UUGUGGgUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 87403 0.69 0.817483
Target:  5'- uGACGCcgAC-GCucACGCCCAGGGGa -3'
miRNA:   3'- -UUGCGuaUGcCGcuUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 150472 0.69 0.842093
Target:  5'- ------gGCGGCGAGCGCCUgguGGGGCc -3'
miRNA:   3'- uugcguaUGCCGCUUGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 138316 0.69 0.808948
Target:  5'- -cUGCAaguCGGCGAucuuuaGCACCCAGGacGACa -3'
miRNA:   3'- uuGCGUau-GCCGCU------UGUGGGUCC--CUG- -5'
14576 5' -56.3 NC_003521.1 + 135254 0.69 0.834064
Target:  5'- cGACGaCAcgGCGGCGGACGCCgacgacgaGGaGGACg -3'
miRNA:   3'- -UUGC-GUa-UGCCGCUUGUGGg-------UC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 7603 0.69 0.832436
Target:  5'- uGACGCAagcuguacggugGCGGCGGACugUCGGGaACg -3'
miRNA:   3'- -UUGCGUa-----------UGCCGCUUGugGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 58944 0.69 0.817483
Target:  5'- gAACGuCAU-CGGCGAGCucGCCgAGGGGu -3'
miRNA:   3'- -UUGC-GUAuGCCGCUUG--UGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 105293 0.69 0.84994
Target:  5'- cAGCGCGUucAUGGCGGGCG--UGGGGACg -3'
miRNA:   3'- -UUGCGUA--UGCCGCUUGUggGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 209428 0.69 0.84994
Target:  5'- aAACGCAcagcagUACGGCGAAgCACCacacgagaCAGGGuACc -3'
miRNA:   3'- -UUGCGU------AUGCCGCUU-GUGG--------GUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 148626 0.69 0.84994
Target:  5'- cGCGCGgccggGCGGCGAAaaacgGCCCcgagcucggcGGGGAUg -3'
miRNA:   3'- uUGCGUa----UGCCGCUUg----UGGG----------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 100980 0.68 0.871603
Target:  5'- cGGCGCGcACGGCGuucuCGCUcgcugagggaggaCAGGGGCg -3'
miRNA:   3'- -UUGCGUaUGCCGCuu--GUGG-------------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 210776 0.68 0.886218
Target:  5'- -cCGCGUGgguUGGgGGACAUCUcuAGGGACa -3'
miRNA:   3'- uuGCGUAU---GCCgCUUGUGGG--UCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.