miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 216842 0.68 0.87232
Target:  5'- -uCGCAgcccGCGGCGGACgacuguuccagGCCCGuggagcGGGACa -3'
miRNA:   3'- uuGCGUa---UGCCGCUUG-----------UGGGU------CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 100980 0.68 0.871603
Target:  5'- cGGCGCGcACGGCGuucuCGCUcgcugagggaggaCAGGGGCg -3'
miRNA:   3'- -UUGCGUaUGCCGCuu--GUGG-------------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 91933 0.68 0.886218
Target:  5'- cGAUGCGguggacccgGCGGCGGAC-CCCGuGGcGGCg -3'
miRNA:   3'- -UUGCGUa--------UGCCGCUUGuGGGU-CC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 235839 0.68 0.865059
Target:  5'- uGACGCGggAUGGUGAggACACCacaCGGGGAg -3'
miRNA:   3'- -UUGCGUa-UGCCGCU--UGUGG---GUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 209555 0.68 0.879375
Target:  5'- cGGCGgGgugGCGGCGAcggugGCGggggUCCGGGGGCg -3'
miRNA:   3'- -UUGCgUa--UGCCGCU-----UGU----GGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 210776 0.68 0.886218
Target:  5'- -cCGCGUGgguUGGgGGACAUCUcuAGGGACa -3'
miRNA:   3'- uuGCGUAU---GCCgCUUGUGGG--UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 135660 0.68 0.885543
Target:  5'- cAGCGUcgGCGGCGucgucacCACCUcguccugGGGGACc -3'
miRNA:   3'- -UUGCGuaUGCCGCuu-----GUGGG-------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 119748 0.68 0.865059
Target:  5'- cGCGUAUGCGGCaGcuggaguaccAGCACaCCuGGGACc -3'
miRNA:   3'- uUGCGUAUGCCG-C----------UUGUG-GGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 167584 0.68 0.895437
Target:  5'- cAGCGCGUgucgauggagaGCGGCGcgcagaggcgccgcaGGCGCUCGGGGuCg -3'
miRNA:   3'- -UUGCGUA-----------UGCCGC---------------UUGUGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 148565 0.68 0.865059
Target:  5'- --gGUA-GCGGCagcGGCACCCAGGGAg -3'
miRNA:   3'- uugCGUaUGCCGc--UUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 104096 0.68 0.857597
Target:  5'- gGACGCGgaagGCGGCGcGCugCCAGuccucGGCg -3'
miRNA:   3'- -UUGCGUa---UGCCGCuUGugGGUCc----CUG- -5'
14576 5' -56.3 NC_003521.1 + 68515 0.68 0.87232
Target:  5'- uGCGCcaGCGGCGucaaGGCugUguGGGACa -3'
miRNA:   3'- uUGCGuaUGCCGC----UUGugGguCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 33205 0.68 0.892846
Target:  5'- -gUGCAggcCGGCGAGcCGCCCAGacGGAUc -3'
miRNA:   3'- uuGCGUau-GCCGCUU-GUGGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 49113 0.68 0.892193
Target:  5'- uGCGCGUggugaccGCGGCGccGCugCUgcGGGGACu -3'
miRNA:   3'- uUGCGUA-------UGCCGCu-UGugGG--UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 218419 0.68 0.886891
Target:  5'- cGCGCAgcauggccagcgacaGCGGCG-GCACCaCGGaGGACa -3'
miRNA:   3'- uUGCGUa--------------UGCCGCuUGUGG-GUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 197273 0.68 0.87232
Target:  5'- cGGCGCcgGCGGCGGGgAgCgGGaGGGCg -3'
miRNA:   3'- -UUGCGuaUGCCGCUUgUgGgUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 219646 0.67 0.904834
Target:  5'- gAACGCGUcuCGGCGGagugaccaucgaaACAgcCCCGGGGGg -3'
miRNA:   3'- -UUGCGUAu-GCCGCU-------------UGU--GGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 133756 0.67 0.922648
Target:  5'- --gGCAggccCGGCGAu--UCCGGGGACg -3'
miRNA:   3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 195405 0.67 0.922648
Target:  5'- cGCGCcgACGGCGGGCACCgGcuaccuGGuGAa -3'
miRNA:   3'- uUGCGuaUGCCGCUUGUGGgU------CC-CUg -5'
14576 5' -56.3 NC_003521.1 + 45654 0.67 0.911405
Target:  5'- -cCGCGgggucCGGCGcACACCCgcuaucAGGGGCc -3'
miRNA:   3'- uuGCGUau---GCCGCuUGUGGG------UCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.