Results 81 - 100 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14576 | 5' | -56.3 | NC_003521.1 | + | 7440 | 0.67 | 0.91714 |
Target: 5'- cACGgAcGCGGCGcacAGCACCaCGcGGGACg -3' miRNA: 3'- uUGCgUaUGCCGC---UUGUGG-GU-CCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 45654 | 0.67 | 0.911405 |
Target: 5'- -cCGCGgggucCGGCGcACACCCgcuaucAGGGGCc -3' miRNA: 3'- uuGCGUau---GCCGCuUGUGGG------UCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 150432 | 0.67 | 0.905443 |
Target: 5'- -uCGCGUGCaGGaGAgcGCGCCCGGGGuCc -3' miRNA: 3'- uuGCGUAUG-CCgCU--UGUGGGUCCCuG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 164774 | 0.67 | 0.905443 |
Target: 5'- gAAC-CAUagugacGCGGCGGGCACgggucgUCGGGGACg -3' miRNA: 3'- -UUGcGUA------UGCCGCUUGUG------GGUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 219646 | 0.67 | 0.904834 |
Target: 5'- gAACGCGUcuCGGCGGagugaccaucgaaACAgcCCCGGGGGg -3' miRNA: 3'- -UUGCGUAu-GCCGCU-------------UGU--GGGUCCCUg -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 234054 | 0.67 | 0.922107 |
Target: 5'- --gGCAUGguacuccUGGCcauGGACGCCCuGGGACu -3' miRNA: 3'- uugCGUAU-------GCCG---CUUGUGGGuCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 63015 | 0.67 | 0.922648 |
Target: 5'- --aGCcgGCGGCGcccacGACGCCCAccaGcGGACa -3' miRNA: 3'- uugCGuaUGCCGC-----UUGUGGGU---C-CCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 133756 | 0.67 | 0.922648 |
Target: 5'- --gGCAggccCGGCGAu--UCCGGGGACg -3' miRNA: 3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 29868 | 0.67 | 0.899255 |
Target: 5'- gGACGCAgaagGCcguGGCGcuguuGCACCUGGGcGACg -3' miRNA: 3'- -UUGCGUa---UG---CCGCu----UGUGGGUCC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 118267 | 0.67 | 0.905443 |
Target: 5'- uGACGCuagccaugaucUGCGGCG-ACcUCUAGGGACg -3' miRNA: 3'- -UUGCGu----------AUGCCGCuUGuGGGUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 150781 | 0.67 | 0.911405 |
Target: 5'- cGCGCGacgACgGGCGGGCGCgagccgCCAGGGGg -3' miRNA: 3'- uUGCGUa--UG-CCGCUUGUG------GGUCCCUg -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 109671 | 0.67 | 0.916577 |
Target: 5'- aGACGUA-GCGGCGGAUgcgaucgGCCgAGGGGu -3' miRNA: 3'- -UUGCGUaUGCCGCUUG-------UGGgUCCCUg -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 123203 | 0.67 | 0.91714 |
Target: 5'- -cCGCAUACGGCgccGggUAggaCGGGGGCg -3' miRNA: 3'- uuGCGUAUGCCG---CuuGUgg-GUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 200334 | 0.67 | 0.91714 |
Target: 5'- uGCGC-UGCGGCGccguGGCGCgCCGcGGACa -3' miRNA: 3'- uUGCGuAUGCCGC----UUGUG-GGUcCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 95543 | 0.67 | 0.899255 |
Target: 5'- aGACGCcgGCGcGCGAGCuggccgccgagGCCgAGGaGGCg -3' miRNA: 3'- -UUGCGuaUGC-CGCUUG-----------UGGgUCC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 148774 | 0.67 | 0.922648 |
Target: 5'- -uCGC-UACGG-GAgGCAcCCCGGGGACc -3' miRNA: 3'- uuGCGuAUGCCgCU-UGU-GGGUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 168090 | 0.67 | 0.91714 |
Target: 5'- -cUGCAgagguCGGCGAAgACCgAGGaGGCg -3' miRNA: 3'- uuGCGUau---GCCGCUUgUGGgUCC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 195405 | 0.67 | 0.922648 |
Target: 5'- cGCGCcgACGGCGGGCACCgGcuaccuGGuGAa -3' miRNA: 3'- uUGCGuaUGCCGCUUGUGGgU------CC-CUg -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 99601 | 0.67 | 0.922648 |
Target: 5'- cGGCGCGU-UGGUGAccugcaGCGCCCGGcGGCg -3' miRNA: 3'- -UUGCGUAuGCCGCU------UGUGGGUCcCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 139096 | 0.67 | 0.922648 |
Target: 5'- uACGUGUuCGGCGugaagGACGCCgAGGGGg -3' miRNA: 3'- uUGCGUAuGCCGC-----UUGUGGgUCCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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