miRNA display CGI


Results 41 - 60 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 58944 0.69 0.817483
Target:  5'- gAACGuCAU-CGGCGAGCucGCCgAGGGGu -3'
miRNA:   3'- -UUGC-GUAuGCCGCUUG--UGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 25547 0.69 0.820853
Target:  5'- --aGCG-ACGGCGGACgcuguugugcaggcgGCCgCGGGGACa -3'
miRNA:   3'- uugCGUaUGCCGCUUG---------------UGG-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 221909 0.69 0.825858
Target:  5'- cGGCGC--GCGGCGc-CACCCuucGGGGCu -3'
miRNA:   3'- -UUGCGuaUGCCGCuuGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 224740 0.69 0.825858
Target:  5'- cGACGCAgGCGGCcAGCGCgUcGGGGCu -3'
miRNA:   3'- -UUGCGUaUGCCGcUUGUGgGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 7603 0.69 0.832436
Target:  5'- uGACGCAagcuguacggugGCGGCGGACugUCGGGaACg -3'
miRNA:   3'- -UUGCGUa-----------UGCCGCUUGugGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 60684 0.69 0.834064
Target:  5'- -gUGC-UGCGGCcgcgcgGGGgACCCGGGGGCg -3'
miRNA:   3'- uuGCGuAUGCCG------CUUgUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 55086 0.69 0.834064
Target:  5'- cGGCGCAcccgcuCGGCGAucaccuccGCACCCGGcGaGACg -3'
miRNA:   3'- -UUGCGUau----GCCGCU--------UGUGGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 110688 0.69 0.834064
Target:  5'- gGugGCGgcaGCGGCG-GCGCCgccgacgacgCAGGGGCa -3'
miRNA:   3'- -UugCGUa--UGCCGCuUGUGG----------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 135254 0.69 0.834064
Target:  5'- cGACGaCAcgGCGGCGGACGCCgacgacgaGGaGGACg -3'
miRNA:   3'- -UUGC-GUa-UGCCGCUUGUGGg-------UC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 4259 0.69 0.839703
Target:  5'- gAugGCAcACGGCGAGCACgaaaaccugagaagCgAGGGAa -3'
miRNA:   3'- -UugCGUaUGCCGCUUGUG--------------GgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 229204 0.69 0.841298
Target:  5'- uGGCGCGUugGGUGAgauugcgAUACCCgccAGuGGACc -3'
miRNA:   3'- -UUGCGUAugCCGCU-------UGUGGG---UC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 150472 0.69 0.842093
Target:  5'- ------gGCGGCGAGCGCCUgguGGGGCc -3'
miRNA:   3'- uugcguaUGCCGCUUGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 105293 0.69 0.84994
Target:  5'- cAGCGCGUucAUGGCGGGCG--UGGGGACg -3'
miRNA:   3'- -UUGCGUA--UGCCGCUUGUggGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 148626 0.69 0.84994
Target:  5'- cGCGCGgccggGCGGCGAAaaacgGCCCcgagcucggcGGGGAUg -3'
miRNA:   3'- uUGCGUa----UGCCGCUUg----UGGG----------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 82765 0.69 0.84994
Target:  5'- cGCGCGacCGGCGGGCcguggaGCaCAGGGACg -3'
miRNA:   3'- uUGCGUauGCCGCUUG------UGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 209428 0.69 0.84994
Target:  5'- aAACGCAcagcagUACGGCGAAgCACCacacgagaCAGGGuACc -3'
miRNA:   3'- -UUGCGU------AUGCCGCUU-GUGG--------GUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 104096 0.68 0.857597
Target:  5'- gGACGCGgaagGCGGCGcGCugCCAGuccucGGCg -3'
miRNA:   3'- -UUGCGUa---UGCCGCuUGugGGUCc----CUG- -5'
14576 5' -56.3 NC_003521.1 + 235839 0.68 0.865059
Target:  5'- uGACGCGggAUGGUGAggACACCacaCGGGGAg -3'
miRNA:   3'- -UUGCGUa-UGCCGCU--UGUGG---GUCCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.