Results 61 - 80 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14576 | 5' | -56.3 | NC_003521.1 | + | 119748 | 0.68 | 0.865059 |
Target: 5'- cGCGUAUGCGGCaGcuggaguaccAGCACaCCuGGGACc -3' miRNA: 3'- uUGCGUAUGCCG-C----------UUGUG-GGuCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 148565 | 0.68 | 0.865059 |
Target: 5'- --gGUA-GCGGCagcGGCACCCAGGGAg -3' miRNA: 3'- uugCGUaUGCCGc--UUGUGGGUCCCUg -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 100980 | 0.68 | 0.871603 |
Target: 5'- cGGCGCGcACGGCGuucuCGCUcgcugagggaggaCAGGGGCg -3' miRNA: 3'- -UUGCGUaUGCCGCuu--GUGG-------------GUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 68515 | 0.68 | 0.87232 |
Target: 5'- uGCGCcaGCGGCGucaaGGCugUguGGGACa -3' miRNA: 3'- uUGCGuaUGCCGC----UUGugGguCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 216842 | 0.68 | 0.87232 |
Target: 5'- -uCGCAgcccGCGGCGGACgacuguuccagGCCCGuggagcGGGACa -3' miRNA: 3'- uuGCGUa---UGCCGCUUG-----------UGGGU------CCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 237713 | 0.68 | 0.87232 |
Target: 5'- cAUGCAcACGGgcUGGAUgaACCCGGGGGCc -3' miRNA: 3'- uUGCGUaUGCC--GCUUG--UGGGUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 197273 | 0.68 | 0.87232 |
Target: 5'- cGGCGCcgGCGGCGGGgAgCgGGaGGGCg -3' miRNA: 3'- -UUGCGuaUGCCGCUUgUgGgUC-CCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 10495 | 0.68 | 0.879375 |
Target: 5'- uGCGCcgGCGGgGAugGcguggcccCCCAGGcGGCg -3' miRNA: 3'- uUGCGuaUGCCgCUugU--------GGGUCC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 209555 | 0.68 | 0.879375 |
Target: 5'- cGGCGgGgugGCGGCGAcggugGCGggggUCCGGGGGCg -3' miRNA: 3'- -UUGCgUa--UGCCGCU-----UGU----GGGUCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 135660 | 0.68 | 0.885543 |
Target: 5'- cAGCGUcgGCGGCGucgucacCACCUcguccugGGGGACc -3' miRNA: 3'- -UUGCGuaUGCCGCuu-----GUGGG-------UCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 210776 | 0.68 | 0.886218 |
Target: 5'- -cCGCGUGgguUGGgGGACAUCUcuAGGGACa -3' miRNA: 3'- uuGCGUAU---GCCgCUUGUGGG--UCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 91933 | 0.68 | 0.886218 |
Target: 5'- cGAUGCGguggacccgGCGGCGGAC-CCCGuGGcGGCg -3' miRNA: 3'- -UUGCGUa--------UGCCGCUUGuGGGU-CC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 218419 | 0.68 | 0.886891 |
Target: 5'- cGCGCAgcauggccagcgacaGCGGCG-GCACCaCGGaGGACa -3' miRNA: 3'- uUGCGUa--------------UGCCGCuUGUGG-GUC-CCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 49113 | 0.68 | 0.892193 |
Target: 5'- uGCGCGUggugaccGCGGCGccGCugCUgcGGGGACu -3' miRNA: 3'- uUGCGUA-------UGCCGCu-UGugGG--UCCCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 33205 | 0.68 | 0.892846 |
Target: 5'- -gUGCAggcCGGCGAGcCGCCCAGacGGAUc -3' miRNA: 3'- uuGCGUau-GCCGCUU-GUGGGUC--CCUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 167584 | 0.68 | 0.895437 |
Target: 5'- cAGCGCGUgucgauggagaGCGGCGcgcagaggcgccgcaGGCGCUCGGGGuCg -3' miRNA: 3'- -UUGCGUA-----------UGCCGC---------------UUGUGGGUCCCuG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 29868 | 0.67 | 0.899255 |
Target: 5'- gGACGCAgaagGCcguGGCGcuguuGCACCUGGGcGACg -3' miRNA: 3'- -UUGCGUa---UG---CCGCu----UGUGGGUCC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 95543 | 0.67 | 0.899255 |
Target: 5'- aGACGCcgGCGcGCGAGCuggccgccgagGCCgAGGaGGCg -3' miRNA: 3'- -UUGCGuaUGC-CGCUUG-----------UGGgUCC-CUG- -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 219646 | 0.67 | 0.904834 |
Target: 5'- gAACGCGUcuCGGCGGagugaccaucgaaACAgcCCCGGGGGg -3' miRNA: 3'- -UUGCGUAu-GCCGCU-------------UGU--GGGUCCCUg -5' |
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14576 | 5' | -56.3 | NC_003521.1 | + | 164774 | 0.67 | 0.905443 |
Target: 5'- gAAC-CAUagugacGCGGCGGGCACgggucgUCGGGGACg -3' miRNA: 3'- -UUGcGUA------UGCCGCUUGUG------GGUCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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