miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 191265 0.66 0.937795
Target:  5'- cACGCGgcaGGUGGugcucuucaugACGCCCAaguGGGACg -3'
miRNA:   3'- uUGCGUaugCCGCU-----------UGUGGGU---CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 178792 0.66 0.937795
Target:  5'- -cCGCGggACgGGCGAggcAUGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUa-UG-CCGCU---UGUGGGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 174061 0.66 0.937795
Target:  5'- --gGCcgGCGGCau-CACCCGcGGGAUg -3'
miRNA:   3'- uugCGuaUGCCGcuuGUGGGU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 237077 0.66 0.935894
Target:  5'- --aGCAUGCGGCGGucuagugagaCCAcGGGACu -3'
miRNA:   3'- uugCGUAUGCCGCUugug------GGU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 130087 0.66 0.932975
Target:  5'- gGACGUGUACGcGCuGGucucCACCC-GGGACc -3'
miRNA:   3'- -UUGCGUAUGC-CG-CUu---GUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 125710 0.66 0.932975
Target:  5'- aGACGC---CGGCGGuCACgaCGGGGGCg -3'
miRNA:   3'- -UUGCGuauGCCGCUuGUGg-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 100602 0.66 0.932975
Target:  5'- gGACGag-GCGGCGaAGCgucucuugGCCgGGGGACc -3'
miRNA:   3'- -UUGCguaUGCCGC-UUG--------UGGgUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 57587 0.66 0.932975
Target:  5'- gGGCGCcgGCGGCGAAC-CCCGa---- -3'
miRNA:   3'- -UUGCGuaUGCCGCUUGuGGGUcccug -5'
14576 5' -56.3 NC_003521.1 + 72991 0.66 0.932975
Target:  5'- --aGCccGCGGCGGucgUGCCCGGGGGg -3'
miRNA:   3'- uugCGuaUGCCGCUu--GUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 18867 0.66 0.932975
Target:  5'- aAAUGCugccGUACGGCGAcCGCCU--GGACg -3'
miRNA:   3'- -UUGCG----UAUGCCGCUuGUGGGucCCUG- -5'
14576 5' -56.3 NC_003521.1 + 224263 0.66 0.932975
Target:  5'- aAAUGCAgGCGcGCGcccuCACCCAGGuGCa -3'
miRNA:   3'- -UUGCGUaUGC-CGCuu--GUGGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 113770 0.66 0.932975
Target:  5'- aGGCGCGUcgacgACGGCG-ACGgCCAGcGcGACg -3'
miRNA:   3'- -UUGCGUA-----UGCCGCuUGUgGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 177192 0.66 0.927926
Target:  5'- uGCGCGUGCGGU--ACuucUCCAGGcGGCg -3'
miRNA:   3'- uUGCGUAUGCCGcuUGu--GGGUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 62106 0.66 0.927926
Target:  5'- gAACGCuu-CGGCGccCGCgCGGGGAa -3'
miRNA:   3'- -UUGCGuauGCCGCuuGUGgGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 103067 0.66 0.927926
Target:  5'- gGGCGgGUGCgcgGGCGAgggcuGCugCUGGGGAUg -3'
miRNA:   3'- -UUGCgUAUG---CCGCU-----UGugGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 63015 0.67 0.922648
Target:  5'- --aGCcgGCGGCGcccacGACGCCCAccaGcGGACa -3'
miRNA:   3'- uugCGuaUGCCGC-----UUGUGGGU---C-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 133756 0.67 0.922648
Target:  5'- --gGCAggccCGGCGAu--UCCGGGGACg -3'
miRNA:   3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 195405 0.67 0.922648
Target:  5'- cGCGCcgACGGCGGGCACCgGcuaccuGGuGAa -3'
miRNA:   3'- uUGCGuaUGCCGCUUGUGGgU------CC-CUg -5'
14576 5' -56.3 NC_003521.1 + 139096 0.67 0.922648
Target:  5'- uACGUGUuCGGCGugaagGACGCCgAGGGGg -3'
miRNA:   3'- uUGCGUAuGCCGC-----UUGUGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 148774 0.67 0.922648
Target:  5'- -uCGC-UACGG-GAgGCAcCCCGGGGACc -3'
miRNA:   3'- uuGCGuAUGCCgCU-UGU-GGGUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.