miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 118001 0.67 0.922648
Target:  5'- cGACGaCGguaGCGGCGGcgugucGCugCCGcGGGACu -3'
miRNA:   3'- -UUGC-GUa--UGCCGCU------UGugGGU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 148774 0.67 0.922648
Target:  5'- -uCGC-UACGG-GAgGCAcCCCGGGGACc -3'
miRNA:   3'- uuGCGuAUGCCgCU-UGU-GGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 166072 0.67 0.922648
Target:  5'- cACGUcgACGGCG-ACGCCagucGGGAg -3'
miRNA:   3'- uUGCGuaUGCCGCuUGUGGgu--CCCUg -5'
14576 5' -56.3 NC_003521.1 + 84759 0.67 0.922648
Target:  5'- gGGCGCGgcgGCGGCGAcguuguugGCACCgCcgaagcagAGGGAg -3'
miRNA:   3'- -UUGCGUa--UGCCGCU--------UGUGG-G--------UCCCUg -5'
14576 5' -56.3 NC_003521.1 + 234054 0.67 0.922107
Target:  5'- --gGCAUGguacuccUGGCcauGGACGCCCuGGGACu -3'
miRNA:   3'- uugCGUAU-------GCCG---CUUGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 102889 0.67 0.91714
Target:  5'- aGGCGCAga-GGCGcagcACGCCCgacAGGGAg -3'
miRNA:   3'- -UUGCGUaugCCGCu---UGUGGG---UCCCUg -5'
14576 5' -56.3 NC_003521.1 + 92018 0.67 0.91714
Target:  5'- aGGCGCGgcggcgGCGGCGGugGguccgggggucCCCGGGGuGCc -3'
miRNA:   3'- -UUGCGUa-----UGCCGCUugU-----------GGGUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 12009 0.67 0.91714
Target:  5'- -cCGCAUGCuucgaagggaGGgGAACGCUC-GGGACu -3'
miRNA:   3'- uuGCGUAUG----------CCgCUUGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 168090 0.67 0.91714
Target:  5'- -cUGCAgagguCGGCGAAgACCgAGGaGGCg -3'
miRNA:   3'- uuGCGUau---GCCGCUUgUGGgUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 200334 0.67 0.91714
Target:  5'- uGCGC-UGCGGCGccguGGCGCgCCGcGGACa -3'
miRNA:   3'- uUGCGuAUGCCGC----UUGUG-GGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 123203 0.67 0.91714
Target:  5'- -cCGCAUACGGCgccGggUAggaCGGGGGCg -3'
miRNA:   3'- uuGCGUAUGCCG---CuuGUgg-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 7440 0.67 0.91714
Target:  5'- cACGgAcGCGGCGcacAGCACCaCGcGGGACg -3'
miRNA:   3'- uUGCgUaUGCCGC---UUGUGG-GU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 109671 0.67 0.916577
Target:  5'- aGACGUA-GCGGCGGAUgcgaucgGCCgAGGGGu -3'
miRNA:   3'- -UUGCGUaUGCCGCUUG-------UGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 88653 0.67 0.911989
Target:  5'- aGGCGCAgagggccgccagguCGGUGGGCcggcggcccgGCUCGGGGACa -3'
miRNA:   3'- -UUGCGUau------------GCCGCUUG----------UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 150781 0.67 0.911405
Target:  5'- cGCGCGacgACgGGCGGGCGCgagccgCCAGGGGg -3'
miRNA:   3'- uUGCGUa--UG-CCGCUUGUG------GGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 45654 0.67 0.911405
Target:  5'- -cCGCGgggucCGGCGcACACCCgcuaucAGGGGCc -3'
miRNA:   3'- uuGCGUau---GCCGCuUGUGGG------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 164774 0.67 0.905443
Target:  5'- gAAC-CAUagugacGCGGCGGGCACgggucgUCGGGGACg -3'
miRNA:   3'- -UUGcGUA------UGCCGCUUGUG------GGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 118267 0.67 0.905443
Target:  5'- uGACGCuagccaugaucUGCGGCG-ACcUCUAGGGACg -3'
miRNA:   3'- -UUGCGu----------AUGCCGCuUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 150432 0.67 0.905443
Target:  5'- -uCGCGUGCaGGaGAgcGCGCCCGGGGuCc -3'
miRNA:   3'- uuGCGUAUG-CCgCU--UGUGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 219646 0.67 0.904834
Target:  5'- gAACGCGUcuCGGCGGagugaccaucgaaACAgcCCCGGGGGg -3'
miRNA:   3'- -UUGCGUAu-GCCGCU-------------UGU--GGGUCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.