miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 73 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 1992 0.95 0.031374
Target:  5'- uAACG-AUACGGCGAACACCCAGGGACa -3'
miRNA:   3'- -UUGCgUAUGCCGCUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 4259 0.69 0.839703
Target:  5'- gAugGCAcACGGCGAGCACgaaaaccugagaagCgAGGGAa -3'
miRNA:   3'- -UugCGUaUGCCGCUUGUG--------------GgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 7440 0.67 0.91714
Target:  5'- cACGgAcGCGGCGcacAGCACCaCGcGGGACg -3'
miRNA:   3'- uUGCgUaUGCCGC---UUGUGG-GU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 7603 0.69 0.832436
Target:  5'- uGACGCAagcuguacggugGCGGCGGACugUCGGGaACg -3'
miRNA:   3'- -UUGCGUa-----------UGCCGCUUGugGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 10495 0.68 0.879375
Target:  5'- uGCGCcgGCGGgGAugGcguggcccCCCAGGcGGCg -3'
miRNA:   3'- uUGCGuaUGCCgCUugU--------GGGUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 11244 0.7 0.773347
Target:  5'- gAACGaugACGGCGAACgucgaGCCCGcguuGGGGCa -3'
miRNA:   3'- -UUGCguaUGCCGCUUG-----UGGGU----CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 12009 0.67 0.91714
Target:  5'- -cCGCAUGCuucgaagggaGGgGAACGCUC-GGGACu -3'
miRNA:   3'- uuGCGUAUG----------CCgCUUGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 14394 0.66 0.946754
Target:  5'- uGGCGCGcUACGGCGugucGCGCUCGGaGAUc -3'
miRNA:   3'- -UUGCGU-AUGCCGCu---UGUGGGUCcCUG- -5'
14576 5' -56.3 NC_003521.1 + 15528 0.7 0.773347
Target:  5'- cGGCgGCAUGUGGCGAACGCgCuGGGAa -3'
miRNA:   3'- -UUG-CGUAUGCCGCUUGUGgGuCCCUg -5'
14576 5' -56.3 NC_003521.1 + 16100 0.74 0.547651
Target:  5'- -cUGCGU-CGGCGAGCACCaCGggcGGGACg -3'
miRNA:   3'- uuGCGUAuGCCGCUUGUGG-GU---CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 17773 0.7 0.764123
Target:  5'- -cCGCcgGCGGCGGACGgUCAGGuGAa -3'
miRNA:   3'- uuGCGuaUGCCGCUUGUgGGUCC-CUg -5'
14576 5' -56.3 NC_003521.1 + 18867 0.66 0.932975
Target:  5'- aAAUGCugccGUACGGCGAcCGCCU--GGACg -3'
miRNA:   3'- -UUGCG----UAUGCCGCUuGUGGGucCCUG- -5'
14576 5' -56.3 NC_003521.1 + 25547 0.69 0.820853
Target:  5'- --aGCG-ACGGCGGACgcuguugugcaggcgGCCgCGGGGACa -3'
miRNA:   3'- uugCGUaUGCCGCUUG---------------UGG-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 27514 0.7 0.782449
Target:  5'- gGGgGCGUGCGGCccgaGGCGCCCAcGGuGGCg -3'
miRNA:   3'- -UUgCGUAUGCCGc---UUGUGGGU-CC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 29868 0.67 0.899255
Target:  5'- gGACGCAgaagGCcguGGCGcuguuGCACCUGGGcGACg -3'
miRNA:   3'- -UUGCGUa---UG---CCGCu----UGUGGGUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 30380 0.69 0.817483
Target:  5'- aAACGUAgguUGCGGCGAcagaaccugcguAgGCCCugacGGGGACa -3'
miRNA:   3'- -UUGCGU---AUGCCGCU------------UgUGGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 33205 0.68 0.892846
Target:  5'- -gUGCAggcCGGCGAGcCGCCCAGacGGAUc -3'
miRNA:   3'- uuGCGUau-GCCGCUU-GUGGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 37378 0.66 0.950896
Target:  5'- cGACuGCGguguucgagGCGGCGGggGCGCCCGGGccuugugcGACg -3'
miRNA:   3'- -UUG-CGUa--------UGCCGCU--UGUGGGUCC--------CUG- -5'
14576 5' -56.3 NC_003521.1 + 38224 0.71 0.732936
Target:  5'- aGGCGCAgggcggccuCGGCGGGCggggcggagacgcgGCCCAGGGuCa -3'
miRNA:   3'- -UUGCGUau-------GCCGCUUG--------------UGGGUCCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.