miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 87759 0.66 0.946754
Target:  5'- gGGCcCcgGCGGCGGAggagGCCUGGGGGCc -3'
miRNA:   3'- -UUGcGuaUGCCGCUUg---UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 88653 0.67 0.911989
Target:  5'- aGGCGCAgagggccgccagguCGGUGGGCcggcggcccgGCUCGGGGACa -3'
miRNA:   3'- -UUGCGUau------------GCCGCUUG----------UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 91309 0.73 0.607082
Target:  5'- cGCGCGUAUGcGUGuGCGCgCGGGGGCa -3'
miRNA:   3'- uUGCGUAUGC-CGCuUGUGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 91933 0.68 0.886218
Target:  5'- cGAUGCGguggacccgGCGGCGGAC-CCCGuGGcGGCg -3'
miRNA:   3'- -UUGCGUa--------UGCCGCUUGuGGGU-CC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 92018 0.67 0.91714
Target:  5'- aGGCGCGgcggcgGCGGCGGugGguccgggggucCCCGGGGuGCc -3'
miRNA:   3'- -UUGCGUa-----UGCCGCUugU-----------GGGUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 95543 0.67 0.899255
Target:  5'- aGACGCcgGCGcGCGAGCuggccgccgagGCCgAGGaGGCg -3'
miRNA:   3'- -UUGCGuaUGC-CGCUUG-----------UGGgUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 99601 0.67 0.922648
Target:  5'- cGGCGCGU-UGGUGAccugcaGCGCCCGGcGGCg -3'
miRNA:   3'- -UUGCGUAuGCCGCU------UGUGGGUCcCUG- -5'
14576 5' -56.3 NC_003521.1 + 100602 0.66 0.932975
Target:  5'- gGACGag-GCGGCGaAGCgucucuugGCCgGGGGACc -3'
miRNA:   3'- -UUGCguaUGCCGC-UUG--------UGGgUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 100980 0.68 0.871603
Target:  5'- cGGCGCGcACGGCGuucuCGCUcgcugagggaggaCAGGGGCg -3'
miRNA:   3'- -UUGCGUaUGCCGCuu--GUGG-------------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 101165 0.7 0.791422
Target:  5'- -cUGCGUcccucuccucagACGGCGuccGCGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUA------------UGCCGCu--UGUGGGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 102334 0.69 0.817483
Target:  5'- uGCGCGUG-GGCGccGACGCCgGGGuGGCg -3'
miRNA:   3'- uUGCGUAUgCCGC--UUGUGGgUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 102371 0.73 0.597094
Target:  5'- uGGCGCcgcCGGCGAugcACGCgCGGGGACg -3'
miRNA:   3'- -UUGCGuauGCCGCU---UGUGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 102663 0.74 0.577198
Target:  5'- aGGCGCGaggagACGGCGAagccgccgggcaGCACCCAGuGGAa -3'
miRNA:   3'- -UUGCGUa----UGCCGCU------------UGUGGGUC-CCUg -5'
14576 5' -56.3 NC_003521.1 + 102889 0.67 0.91714
Target:  5'- aGGCGCAga-GGCGcagcACGCCCgacAGGGAg -3'
miRNA:   3'- -UUGCGUaugCCGCu---UGUGGG---UCCCUg -5'
14576 5' -56.3 NC_003521.1 + 103067 0.66 0.927926
Target:  5'- gGGCGgGUGCgcgGGCGAgggcuGCugCUGGGGAUg -3'
miRNA:   3'- -UUGCgUAUG---CCGCU-----UGugGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 103118 0.72 0.687018
Target:  5'- gGACGCGgggugagGCuGGUGGGgagaGCCCAGGGGCa -3'
miRNA:   3'- -UUGCGUa------UG-CCGCUUg---UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 104096 0.68 0.857597
Target:  5'- gGACGCGgaagGCGGCGcGCugCCAGuccucGGCg -3'
miRNA:   3'- -UUGCGUa---UGCCGCuUGugGGUCc----CUG- -5'
14576 5' -56.3 NC_003521.1 + 105048 0.73 0.647143
Target:  5'- -cCGCccGUGC-GCGAGCAgcCCCAGGGGCg -3'
miRNA:   3'- uuGCG--UAUGcCGCUUGU--GGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 105293 0.69 0.84994
Target:  5'- cAGCGCGUucAUGGCGGGCG--UGGGGACg -3'
miRNA:   3'- -UUGCGUA--UGCCGCUUGUggGUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.