miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 105410 0.66 0.950896
Target:  5'- cGCGCGUgACGGCGAugGggauGGGGCa -3'
miRNA:   3'- uUGCGUA-UGCCGCUugUggguCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 109671 0.67 0.916577
Target:  5'- aGACGUA-GCGGCGGAUgcgaucgGCCgAGGGGu -3'
miRNA:   3'- -UUGCGUaUGCCGCUUG-------UGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 110688 0.69 0.834064
Target:  5'- gGugGCGgcaGCGGCG-GCGCCgccgacgacgCAGGGGCa -3'
miRNA:   3'- -UugCGUa--UGCCGCuUGUGG----------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 112056 0.66 0.950896
Target:  5'- cGACGCcUGCuGGaGGACGCCgcgguggggauCAGGGGCg -3'
miRNA:   3'- -UUGCGuAUG-CCgCUUGUGG-----------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 113380 0.71 0.716494
Target:  5'- gGAgGguUACGGCGGACGCCgCGGGcGGg -3'
miRNA:   3'- -UUgCguAUGCCGCUUGUGG-GUCC-CUg -5'
14576 5' -56.3 NC_003521.1 + 113575 0.69 0.808948
Target:  5'- gGACGCgGUGgGGCuGGGC-CUCGGGGGCa -3'
miRNA:   3'- -UUGCG-UAUgCCG-CUUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 113770 0.66 0.932975
Target:  5'- aGGCGCGUcgacgACGGCG-ACGgCCAGcGcGACg -3'
miRNA:   3'- -UUGCGUA-----UGCCGCuUGUgGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 115949 0.66 0.942387
Target:  5'- gGGCGUcuugcggcucaGUACGGCGuuguccgaGACGCCCAGGu-- -3'
miRNA:   3'- -UUGCG-----------UAUGCCGC--------UUGUGGGUCCcug -5'
14576 5' -56.3 NC_003521.1 + 116883 0.7 0.773347
Target:  5'- uGGCGCGgcUGCGGCGGcGCGCCgGcGGGAg -3'
miRNA:   3'- -UUGCGU--AUGCCGCU-UGUGGgU-CCCUg -5'
14576 5' -56.3 NC_003521.1 + 117506 0.7 0.782449
Target:  5'- cGGgGCGUACGGCGGuauGCACuCCGuGGGCu -3'
miRNA:   3'- -UUgCGUAUGCCGCU---UGUG-GGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 118001 0.67 0.922648
Target:  5'- cGACGaCGguaGCGGCGGcgugucGCugCCGcGGGACu -3'
miRNA:   3'- -UUGC-GUa--UGCCGCU------UGugGGU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 118267 0.67 0.905443
Target:  5'- uGACGCuagccaugaucUGCGGCG-ACcUCUAGGGACg -3'
miRNA:   3'- -UUGCGu----------AUGCCGCuUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 119748 0.68 0.865059
Target:  5'- cGCGUAUGCGGCaGcuggaguaccAGCACaCCuGGGACc -3'
miRNA:   3'- uUGCGUAUGCCG-C----------UUGUG-GGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 120344 0.66 0.950896
Target:  5'- cGCGCcucuCGGCGGagACACCUGcGGACg -3'
miRNA:   3'- uUGCGuau-GCCGCU--UGUGGGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 120546 0.75 0.508095
Target:  5'- cGGCgGCcgGCGGUcccggggGAGCGCCCGGGGAUa -3'
miRNA:   3'- -UUG-CGuaUGCCG-------CUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 122748 0.66 0.946754
Target:  5'- -cCGCcgAUGGCuGACACCgggcaCGGGGAUg -3'
miRNA:   3'- uuGCGuaUGCCGcUUGUGG-----GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 123203 0.67 0.91714
Target:  5'- -cCGCAUACGGCgccGggUAggaCGGGGGCg -3'
miRNA:   3'- uuGCGUAUGCCG---CuuGUgg-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 125710 0.66 0.932975
Target:  5'- aGACGC---CGGCGGuCACgaCGGGGGCg -3'
miRNA:   3'- -UUGCGuauGCCGCUuGUGg-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 126732 0.66 0.937795
Target:  5'- cGGCGCGguCGGCGAcaugGCugCguuGGGGACg -3'
miRNA:   3'- -UUGCGUauGCCGCU----UGugGg--UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 130087 0.66 0.932975
Target:  5'- gGACGUGUACGcGCuGGucucCACCC-GGGACc -3'
miRNA:   3'- -UUGCGUAUGC-CG-CUu---GUGGGuCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.