miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 150432 0.67 0.905443
Target:  5'- -uCGCGUGCaGGaGAgcGCGCCCGGGGuCc -3'
miRNA:   3'- uuGCGUAUG-CCgCU--UGUGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 150097 0.66 0.942387
Target:  5'- --aGCuAUGCGggaacagaGCGggUACCUAGGGAUc -3'
miRNA:   3'- uugCG-UAUGC--------CGCuuGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 149404 0.66 0.950896
Target:  5'- aGGCGCAUGCGcaCGGuCGCCCuGuGGGCc -3'
miRNA:   3'- -UUGCGUAUGCc-GCUuGUGGGuC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 148774 0.67 0.922648
Target:  5'- -uCGC-UACGG-GAgGCAcCCCGGGGACc -3'
miRNA:   3'- uuGCGuAUGCCgCU-UGU-GGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 148626 0.69 0.84994
Target:  5'- cGCGCGgccggGCGGCGAAaaacgGCCCcgagcucggcGGGGAUg -3'
miRNA:   3'- uUGCGUa----UGCCGCUUg----UGGG----------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 148565 0.68 0.865059
Target:  5'- --gGUA-GCGGCagcGGCACCCAGGGAg -3'
miRNA:   3'- uugCGUaUGCCGc--UUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 146518 0.66 0.950492
Target:  5'- -cCGCAgaaACGGCGGcucCACCCGGGucccuccGGCg -3'
miRNA:   3'- uuGCGUa--UGCCGCUu--GUGGGUCC-------CUG- -5'
14576 5' -56.3 NC_003521.1 + 139451 0.71 0.716494
Target:  5'- cGGCGCG-ACGGCucgcGCACCC-GGGACu -3'
miRNA:   3'- -UUGCGUaUGCCGcu--UGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 139096 0.67 0.922648
Target:  5'- uACGUGUuCGGCGugaagGACGCCgAGGGGg -3'
miRNA:   3'- uUGCGUAuGCCGC-----UUGUGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 138509 0.69 0.808948
Target:  5'- cGCGCAcgacgacgaUGCcGCGGACGCCUacuacgacGGGGACg -3'
miRNA:   3'- uUGCGU---------AUGcCGCUUGUGGG--------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 138316 0.69 0.808948
Target:  5'- -cUGCAaguCGGCGAucuuuaGCACCCAGGacGACa -3'
miRNA:   3'- uuGCGUau-GCCGCU------UGUGGGUCC--CUG- -5'
14576 5' -56.3 NC_003521.1 + 135754 0.66 0.946754
Target:  5'- gGugGCG-GCGGUGGgauCGCCCcuGGGGCu -3'
miRNA:   3'- -UugCGUaUGCCGCUu--GUGGGu-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 135660 0.68 0.885543
Target:  5'- cAGCGUcgGCGGCGucgucacCACCUcguccugGGGGACc -3'
miRNA:   3'- -UUGCGuaUGCCGCuu-----GUGGG-------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 135359 0.66 0.937795
Target:  5'- cGCGCGccgucuccGCGGCGGuuauCGCCCGcGGGCg -3'
miRNA:   3'- uUGCGUa-------UGCCGCUu---GUGGGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 135254 0.69 0.834064
Target:  5'- cGACGaCAcgGCGGCGGACGCCgacgacgaGGaGGACg -3'
miRNA:   3'- -UUGC-GUa-UGCCGCUUGUGGg-------UC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 133756 0.67 0.922648
Target:  5'- --gGCAggccCGGCGAu--UCCGGGGACg -3'
miRNA:   3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 130747 0.69 0.808948
Target:  5'- gGACGUGU-CGGCGGGCGCgagcgccgcgCCGGGGGa -3'
miRNA:   3'- -UUGCGUAuGCCGCUUGUG----------GGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 130087 0.66 0.932975
Target:  5'- gGACGUGUACGcGCuGGucucCACCC-GGGACc -3'
miRNA:   3'- -UUGCGUAUGC-CG-CUu---GUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 126732 0.66 0.937795
Target:  5'- cGGCGCGguCGGCGAcaugGCugCguuGGGGACg -3'
miRNA:   3'- -UUGCGUauGCCGCU----UGugGg--UCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.