miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 87403 0.69 0.817483
Target:  5'- uGACGCcgAC-GCucACGCCCAGGGGa -3'
miRNA:   3'- -UUGCGuaUGcCGcuUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 200301 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 27514 0.7 0.782449
Target:  5'- gGGgGCGUGCGGCccgaGGCGCCCAcGGuGGCg -3'
miRNA:   3'- -UUgCGUAUGCCGc---UUGUGGGU-CC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 117506 0.7 0.782449
Target:  5'- cGGgGCGUACGGCGGuauGCACuCCGuGGGCu -3'
miRNA:   3'- -UUgCGUAUGCCGCU---UGUG-GGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 101165 0.7 0.791422
Target:  5'- -cUGCGUcccucuccucagACGGCGuccGCGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUA------------UGCCGCu--UGUGGGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 183918 0.7 0.800258
Target:  5'- cGGCGCuGUAcCGGUGcAACA-CCAGGGACu -3'
miRNA:   3'- -UUGCG-UAU-GCCGC-UUGUgGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 113575 0.69 0.808948
Target:  5'- gGACGCgGUGgGGCuGGGC-CUCGGGGGCa -3'
miRNA:   3'- -UUGCG-UAUgCCG-CUUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 138316 0.69 0.808948
Target:  5'- -cUGCAaguCGGCGAucuuuaGCACCCAGGacGACa -3'
miRNA:   3'- uuGCGUau-GCCGCU------UGUGGGUCC--CUG- -5'
14576 5' -56.3 NC_003521.1 + 130747 0.69 0.808948
Target:  5'- gGACGUGU-CGGCGGGCGCgagcgccgcgCCGGGGGa -3'
miRNA:   3'- -UUGCGUAuGCCGCUUGUG----------GGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 116883 0.7 0.773347
Target:  5'- uGGCGCGgcUGCGGCGGcGCGCCgGcGGGAg -3'
miRNA:   3'- -UUGCGU--AUGCCGCU-UGUGGgU-CCCUg -5'
14576 5' -56.3 NC_003521.1 + 11244 0.7 0.773347
Target:  5'- gAACGaugACGGCGAACgucgaGCCCGcguuGGGGCa -3'
miRNA:   3'- -UUGCguaUGCCGCUUG-----UGGGU----CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 17773 0.7 0.764123
Target:  5'- -cCGCcgGCGGCGGACGgUCAGGuGAa -3'
miRNA:   3'- uuGCGuaUGCCGCUUGUgGGUCC-CUg -5'
14576 5' -56.3 NC_003521.1 + 43118 0.78 0.345562
Target:  5'- aAGCGC-UGCGGCGAGCGCUCGGcgcuGGGCg -3'
miRNA:   3'- -UUGCGuAUGCCGCUUGUGGGUC----CCUG- -5'
14576 5' -56.3 NC_003521.1 + 91309 0.73 0.607082
Target:  5'- cGCGCGUAUGcGUGuGCGCgCGGGGGCa -3'
miRNA:   3'- uUGCGUAUGC-CGCuUGUGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 105048 0.73 0.647143
Target:  5'- -cCGCccGUGC-GCGAGCAgcCCCAGGGGCg -3'
miRNA:   3'- uuGCG--UAUGcCGCUUGU--GGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 239663 0.73 0.647143
Target:  5'- -cCGUAgGCGGCGccguGGCuCCCGGGGACg -3'
miRNA:   3'- uuGCGUaUGCCGC----UUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 103118 0.72 0.687018
Target:  5'- gGACGCGgggugagGCuGGUGGGgagaGCCCAGGGGCa -3'
miRNA:   3'- -UUGCGUa------UG-CCGCUUg---UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 113380 0.71 0.716494
Target:  5'- gGAgGguUACGGCGGACGCCgCGGGcGGg -3'
miRNA:   3'- -UUgCguAUGCCGCUUGUGG-GUCC-CUg -5'
14576 5' -56.3 NC_003521.1 + 238452 0.71 0.732936
Target:  5'- aGGCGCAgggcggccuCGGCGGGCggggcggagacgcgGCCCAGGGuCa -3'
miRNA:   3'- -UUGCGUau-------GCCGCUUG--------------UGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 41942 0.71 0.735814
Target:  5'- cACGCG-GCuGCGAcaguGCAUCCGGGGGCa -3'
miRNA:   3'- uUGCGUaUGcCGCU----UGUGGGUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.