miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 103118 0.72 0.687018
Target:  5'- gGACGCGgggugagGCuGGUGGGgagaGCCCAGGGGCa -3'
miRNA:   3'- -UUGCGUa------UG-CCGCUUg---UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 239663 0.73 0.647143
Target:  5'- -cCGUAgGCGGCGccguGGCuCCCGGGGACg -3'
miRNA:   3'- uuGCGUaUGCCGC----UUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 105048 0.73 0.647143
Target:  5'- -cCGCccGUGC-GCGAGCAgcCCCAGGGGCg -3'
miRNA:   3'- uuGCG--UAUGcCGCUUGU--GGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 91309 0.73 0.607082
Target:  5'- cGCGCGUAUGcGUGuGCGCgCGGGGGCa -3'
miRNA:   3'- uUGCGUAUGC-CGCuUGUGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 43118 0.78 0.345562
Target:  5'- aAGCGC-UGCGGCGAGCGCUCGGcgcuGGGCg -3'
miRNA:   3'- -UUGCGuAUGCCGCUUGUGGGUC----CCUG- -5'
14576 5' -56.3 NC_003521.1 + 117506 0.7 0.782449
Target:  5'- cGGgGCGUACGGCGGuauGCACuCCGuGGGCu -3'
miRNA:   3'- -UUgCGUAUGCCGCU---UGUG-GGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 101165 0.7 0.791422
Target:  5'- -cUGCGUcccucuccucagACGGCGuccGCGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUA------------UGCCGCu--UGUGGGUC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 55086 0.69 0.834064
Target:  5'- cGGCGCAcccgcuCGGCGAucaccuccGCACCCGGcGaGACg -3'
miRNA:   3'- -UUGCGUau----GCCGCU--------UGUGGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 60684 0.69 0.834064
Target:  5'- -gUGC-UGCGGCcgcgcgGGGgACCCGGGGGCg -3'
miRNA:   3'- uuGCGuAUGCCG------CUUgUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 224740 0.69 0.825858
Target:  5'- cGACGCAgGCGGCcAGCGCgUcGGGGCu -3'
miRNA:   3'- -UUGCGUaUGCCGcUUGUGgGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 221909 0.69 0.825858
Target:  5'- cGGCGC--GCGGCGc-CACCCuucGGGGCu -3'
miRNA:   3'- -UUGCGuaUGCCGCuuGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 25547 0.69 0.820853
Target:  5'- --aGCG-ACGGCGGACgcuguugugcaggcgGCCgCGGGGACa -3'
miRNA:   3'- uugCGUaUGCCGCUUG---------------UGG-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 102334 0.69 0.817483
Target:  5'- uGCGCGUG-GGCGccGACGCCgGGGuGGCg -3'
miRNA:   3'- uUGCGUAUgCCGC--UUGUGGgUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 87403 0.69 0.817483
Target:  5'- uGACGCcgAC-GCucACGCCCAGGGGa -3'
miRNA:   3'- -UUGCGuaUGcCGcuUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 130747 0.69 0.808948
Target:  5'- gGACGUGU-CGGCGGGCGCgagcgccgcgCCGGGGGa -3'
miRNA:   3'- -UUGCGUAuGCCGCUUGUG----------GGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 138316 0.69 0.808948
Target:  5'- -cUGCAaguCGGCGAucuuuaGCACCCAGGacGACa -3'
miRNA:   3'- uuGCGUau-GCCGCU------UGUGGGUCC--CUG- -5'
14576 5' -56.3 NC_003521.1 + 113575 0.69 0.808948
Target:  5'- gGACGCgGUGgGGCuGGGC-CUCGGGGGCa -3'
miRNA:   3'- -UUGCG-UAUgCCG-CUUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 183918 0.7 0.800258
Target:  5'- cGGCGCuGUAcCGGUGcAACA-CCAGGGACu -3'
miRNA:   3'- -UUGCG-UAU-GCCGC-UUGUgGGUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.