miRNA display CGI


Results 61 - 80 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 148626 0.69 0.84994
Target:  5'- cGCGCGgccggGCGGCGAAaaacgGCCCcgagcucggcGGGGAUg -3'
miRNA:   3'- uUGCGUa----UGCCGCUUg----UGGG----------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 209428 0.69 0.84994
Target:  5'- aAACGCAcagcagUACGGCGAAgCACCacacgagaCAGGGuACc -3'
miRNA:   3'- -UUGCGU------AUGCCGCUU-GUGG--------GUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 235839 0.68 0.865059
Target:  5'- uGACGCGggAUGGUGAggACACCacaCGGGGAg -3'
miRNA:   3'- -UUGCGUa-UGCCGCU--UGUGG---GUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 100980 0.68 0.871603
Target:  5'- cGGCGCGcACGGCGuucuCGCUcgcugagggaggaCAGGGGCg -3'
miRNA:   3'- -UUGCGUaUGCCGCuu--GUGG-------------GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 216842 0.68 0.87232
Target:  5'- -uCGCAgcccGCGGCGGACgacuguuccagGCCCGuggagcGGGACa -3'
miRNA:   3'- uuGCGUa---UGCCGCUUG-----------UGGGU------CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 237713 0.68 0.87232
Target:  5'- cAUGCAcACGGgcUGGAUgaACCCGGGGGCc -3'
miRNA:   3'- uUGCGUaUGCC--GCUUG--UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 10495 0.68 0.879375
Target:  5'- uGCGCcgGCGGgGAugGcguggcccCCCAGGcGGCg -3'
miRNA:   3'- uUGCGuaUGCCgCUugU--------GGGUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 150472 0.69 0.842093
Target:  5'- ------gGCGGCGAGCGCCUgguGGGGCc -3'
miRNA:   3'- uugcguaUGCCGCUUGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 87403 0.69 0.817483
Target:  5'- uGACGCcgAC-GCucACGCCCAGGGGa -3'
miRNA:   3'- -UUGCGuaUGcCGcuUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 102334 0.69 0.817483
Target:  5'- uGCGCGUG-GGCGccGACGCCgGGGuGGCg -3'
miRNA:   3'- uUGCGUAUgCCGC--UUGUGGgUCC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 25547 0.69 0.820853
Target:  5'- --aGCG-ACGGCGGACgcuguugugcaggcgGCCgCGGGGACa -3'
miRNA:   3'- uugCGUaUGCCGCUUG---------------UGG-GUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 221909 0.69 0.825858
Target:  5'- cGGCGC--GCGGCGc-CACCCuucGGGGCu -3'
miRNA:   3'- -UUGCGuaUGCCGCuuGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 224740 0.69 0.825858
Target:  5'- cGACGCAgGCGGCcAGCGCgUcGGGGCu -3'
miRNA:   3'- -UUGCGUaUGCCGcUUGUGgGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 60684 0.69 0.834064
Target:  5'- -gUGC-UGCGGCcgcgcgGGGgACCCGGGGGCg -3'
miRNA:   3'- uuGCGuAUGCCG------CUUgUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 55086 0.69 0.834064
Target:  5'- cGGCGCAcccgcuCGGCGAucaccuccGCACCCGGcGaGACg -3'
miRNA:   3'- -UUGCGUau----GCCGCU--------UGUGGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 37378 0.66 0.950896
Target:  5'- cGACuGCGguguucgagGCGGCGGggGCGCCCGGGccuugugcGACg -3'
miRNA:   3'- -UUG-CGUa--------UGCCGCU--UGUGGGUCC--------CUG- -5'
14576 5' -56.3 NC_003521.1 + 120546 0.75 0.508095
Target:  5'- cGGCgGCcgGCGGUcccggggGAGCGCCCGGGGAUa -3'
miRNA:   3'- -UUG-CGuaUGCCG-------CUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 16100 0.74 0.547651
Target:  5'- -cUGCGU-CGGCGAGCACCaCGggcGGGACg -3'
miRNA:   3'- uuGCGUAuGCCGCUUGUGG-GU---CCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.