miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 1992 0.95 0.031374
Target:  5'- uAACG-AUACGGCGAACACCCAGGGACa -3'
miRNA:   3'- -UUGCgUAUGCCGCUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 30380 0.69 0.817483
Target:  5'- aAACGUAgguUGCGGCGAcagaaccugcguAgGCCCugacGGGGACa -3'
miRNA:   3'- -UUGCGU---AUGCCGCU------------UgUGGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 7603 0.69 0.832436
Target:  5'- uGACGCAagcuguacggugGCGGCGGACugUCGGGaACg -3'
miRNA:   3'- -UUGCGUa-----------UGCCGCUUGugGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 37378 0.66 0.950896
Target:  5'- cGACuGCGguguucgagGCGGCGGggGCGCCCGGGccuugugcGACg -3'
miRNA:   3'- -UUG-CGUa--------UGCCGCU--UGUGGGUCC--------CUG- -5'
14576 5' -56.3 NC_003521.1 + 102371 0.73 0.597094
Target:  5'- uGGCGCcgcCGGCGAugcACGCgCGGGGACg -3'
miRNA:   3'- -UUGCGuauGCCGCU---UGUGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 185748 0.73 0.597094
Target:  5'- gAGCGgGUGCGcCgGAGCGCCUAGGGGCc -3'
miRNA:   3'- -UUGCgUAUGCcG-CUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 139451 0.71 0.716494
Target:  5'- cGGCGCG-ACGGCucgcGCACCC-GGGACu -3'
miRNA:   3'- -UUGCGUaUGCCGcu--UGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 166217 0.71 0.726193
Target:  5'- uGGCGCG-GCGGCGAggcGCGCCgGccgcGGGACg -3'
miRNA:   3'- -UUGCGUaUGCCGCU---UGUGGgU----CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 76671 0.71 0.745348
Target:  5'- aAACGCGgACuGCGAggACGCUgGGGGACa -3'
miRNA:   3'- -UUGCGUaUGcCGCU--UGUGGgUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 168058 0.69 0.808948
Target:  5'- -cCGCcgACGGCGggUGCUCgagacgcgGGGGGCu -3'
miRNA:   3'- uuGCGuaUGCCGCuuGUGGG--------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 15528 0.7 0.773347
Target:  5'- cGGCgGCAUGUGGCGAACGCgCuGGGAa -3'
miRNA:   3'- -UUG-CGUAUGCCGCUUGUGgGuCCCUg -5'
14576 5' -56.3 NC_003521.1 + 38224 0.71 0.732936
Target:  5'- aGGCGCAgggcggccuCGGCGGGCggggcggagacgcgGCCCAGGGuCa -3'
miRNA:   3'- -UUGCGUau-------GCCGCUUG--------------UGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 120546 0.75 0.508095
Target:  5'- cGGCgGCcgGCGGUcccggggGAGCGCCCGGGGAUa -3'
miRNA:   3'- -UUG-CGuaUGCCG-------CUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 240622 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 16100 0.74 0.547651
Target:  5'- -cUGCGU-CGGCGAGCACCaCGggcGGGACg -3'
miRNA:   3'- uuGCGUAuGCCGCUUGUGG-GU---CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 236485 0.71 0.726193
Target:  5'- -cCGCcgGCGGCGGugGCgCCAGgcauGGACg -3'
miRNA:   3'- uuGCGuaUGCCGCUugUG-GGUC----CCUG- -5'
14576 5' -56.3 NC_003521.1 + 138509 0.69 0.808948
Target:  5'- cGCGCAcgacgacgaUGCcGCGGACGCCUacuacgacGGGGACg -3'
miRNA:   3'- uUGCGU---------AUGcCGCUUGUGGG--------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 58944 0.69 0.817483
Target:  5'- gAACGuCAU-CGGCGAGCucGCCgAGGGGu -3'
miRNA:   3'- -UUGC-GUAuGCCGCUUG--UGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 102663 0.74 0.577198
Target:  5'- aGGCGCGaggagACGGCGAagccgccgggcaGCACCCAGuGGAa -3'
miRNA:   3'- -UUGCGUa----UGCCGCU------------UGUGGGUC-CCUg -5'
14576 5' -56.3 NC_003521.1 + 39436 0.73 0.647143
Target:  5'- -cCGUAgGCGGCGccguGGCuCCCGGGGACg -3'
miRNA:   3'- uuGCGUaUGCCGC----UUGuGGGUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.